Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N03
(510 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 231 9e-60
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 170 1e-41
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 134 1e-30
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 133 2e-30
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 124 9e-28
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 118 6e-26
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 115 7e-25
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 111 7e-24
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 101 7e-21
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 101 9e-21
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 101 1e-20
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 98 9e-20
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 96 4e-19
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 84 2e-15
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 81 1e-14
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 80 3e-14
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 77 2e-13
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 67 2e-10
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 63 3e-09
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 62 5e-09
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 62 9e-09
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 59 7e-08
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 50 2e-05
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 44 0.002
UniRef50_A0EZZ8 Cluster: 60S ribosomal protein L6; n=5; Euteleos... 44 0.003
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 43 0.004
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 42 0.006
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 42 0.008
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 35 1.2
UniRef50_UPI0000D55A40 Cluster: PREDICTED: similar to CG33232-PC... 33 3.8
UniRef50_Q69TX1 Cluster: Putative uncharacterized protein P0021C... 32 8.7
UniRef50_P45744 Cluster: Isochorismate synthase dhbC; n=18; Bact... 32 8.7
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 231 bits (564), Expect = 9e-60
Identities = 112/167 (67%), Positives = 123/167 (73%)
Frame = +1
Query: 10 KIRCRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFN 189
KIR S G+ FSKHVRR RPNL GTVCILLAGRHAGKR TGPFAFN
Sbjct: 101 KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 160
Query: 190 ACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE 369
+CPLRRIPQRYVIGTST++ LG+FKLP H +D YF +G+DIFATKKE
Sbjct: 161 SCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFATKKE 220
Query: 370 KYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
KYVPSEQRK DQK VDEAVIKAI RPDKK LRGYL+A+FGLRSSQ+
Sbjct: 221 KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQY 267
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 170 bits (414), Expect = 1e-41
Identities = 89/167 (53%), Positives = 107/167 (64%), Gaps = 1/167 (0%)
Frame = +1
Query: 13 IRCRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNA 192
++ R +FS+H R TR NLTPGTV ILLAGRH GKR TGPFA N+
Sbjct: 94 VKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFALNS 153
Query: 193 CPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGE-DIFATKKE 369
CPLRR+ QRYVIGTS+KVDLG FK+P HL+DAYF GE DIFA KKE
Sbjct: 154 CPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYF----RRLKAKKDKKTGEADIFAAKKE 209
Query: 370 KYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
++VP+EQRK DQK VD A++K I+ P+ K YL+ F L SSQ+
Sbjct: 210 RFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFALHSSQY 256
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 134 bits (324), Expect = 1e-30
Identities = 71/162 (43%), Positives = 90/162 (55%)
Frame = +1
Query: 10 KIRCRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFN 189
K+R R K FS HVR+ R ++ PGTV ILLAG H GKR TGPF +N
Sbjct: 71 KLRLR-RAKCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLKALKSGLLLVTGPFKYN 129
Query: 190 ACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE 369
PLRR+ Q YVI TST++D+ F +P H+DD YF +F+T+ +
Sbjct: 130 GVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF----RRVDLKESKTDAGKLFSTETK 185
Query: 370 KYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGL 495
KY S+ RK DQKLVD + AI+ PD K L YLR+ F L
Sbjct: 186 KYTVSDIRKEDQKLVDNQIRAAIKSHPDSKILHAYLRSLFSL 227
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 133 bits (322), Expect = 2e-30
Identities = 72/158 (45%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Frame = +1
Query: 25 SHGKS-FSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPL 201
SHGK FS+HVR+ R ++TPGT+ I+L GRH GKR TGP N PL
Sbjct: 127 SHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPL 186
Query: 202 RRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVP 381
RR Q++VI TSTK+D+ + K+P HL DAYF Q +IF T+KEKY
Sbjct: 187 RRTHQKFVIATSTKIDISNVKIPKHLTDAYF----KKKKLRKPRHQEGEIFDTEKEKYEI 242
Query: 382 SEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGL 495
+EQRK DQK VD ++ I+ P L+GYLR+ F L
Sbjct: 243 TEQRKIDQKAVDSQILPKIKAIPQ---LQGYLRSVFAL 277
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 124 bits (300), Expect = 9e-28
Identities = 71/162 (43%), Positives = 89/162 (54%)
Frame = +1
Query: 25 SHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLR 204
SH K S+ R +TPGTV ILLAG H GKR TGP+ N CPLR
Sbjct: 104 SHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLKTGLLPVTGPYGVNGCPLR 163
Query: 205 RIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPS 384
RI Q YVI TSTK+DL KLP LDD YF +GE IF K +++V S
Sbjct: 164 RINQIYVIATSTKLDLSKVKLPEGLDDRYF--KRNKGPKRGRKDEGE-IFEAKPQEHVVS 220
Query: 385 EQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
E+ K Q VD+ V++A++ P+KK L YL A+F LR+ +
Sbjct: 221 EEHKKTQAEVDKQVLEAVKAHPEKKMLLHYLAATFSLRNRMY 262
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 118 bits (285), Expect = 6e-26
Identities = 63/154 (40%), Positives = 90/154 (58%)
Frame = +1
Query: 43 SKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRY 222
+K+ + R +L PGT+ ILLAG + GKR +GP N PLRR+ Q+
Sbjct: 85 NKNPPKIRKSLQPGTILILLAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKL 144
Query: 223 VIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKAD 402
VI TST++D+ + K+P H++D YF +G DIFA+K E+Y P+EQRK D
Sbjct: 145 VIATSTRIDISNVKVPEHINDTYF----RRHKVKKEAKEG-DIFASKPERYTPTEQRKKD 199
Query: 403 QKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSS 504
Q VD ++KAI+ +PD L YLR FGL+++
Sbjct: 200 QAEVDVQLLKAIKAQPDAAMLVKYLRTIFGLKNN 233
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 115 bits (276), Expect = 7e-25
Identities = 67/153 (43%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Frame = +1
Query: 58 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 237
+ R ++TPGTV ILLAG H GKR TGPF N PLRRIPQ YVI TS
Sbjct: 95 KLRSSITPGTVLILLAGAHRGKRVVFLKQLNSGLLLVTGPFKINGVPLRRIPQSYVIATS 154
Query: 238 TKVDLGDFKLPAH--LDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKL 411
T +D+ D KLP H D++YF + ED+F E+ PSEQR ADQK
Sbjct: 155 THIDVSDVKLPEHAFADESYF------KGEPKKKKRSEDMFEEAAEEKKPSEQRIADQKA 208
Query: 412 VDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
VD+ ++ I P+ K YL + F LR QF
Sbjct: 209 VDDQILPKISAVPNMKK---YLSSLFSLRKGQF 238
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 111 bits (268), Expect = 7e-24
Identities = 64/150 (42%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Frame = +1
Query: 64 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 240
R LTPGTV I+LAGRH GKR TGP N PLRRI Q +VI TS
Sbjct: 68 RKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSL 127
Query: 241 KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVDE 420
KV++ K+P H++D YF G++IFA+ K +Y SEQRK D K VD
Sbjct: 128 KVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVDA 181
Query: 421 AVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
++ AI+ P+ K L GYL F L +Q+
Sbjct: 182 PILAAIKKHPEHKFLFGYLGTRFSLGKNQY 211
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 101 bits (243), Expect = 7e-21
Identities = 59/149 (39%), Positives = 79/149 (53%)
Frame = +1
Query: 64 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTK 243
R ++TPGTV I+LAGR AGKR TGPF N PLRRI QRYVI TSTK
Sbjct: 88 RKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTK 147
Query: 244 VDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVDEA 423
+D+ K+ A ++DAYF ++ K EK ++ R ADQK VD A
Sbjct: 148 IDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDE---KKAEKKKIADSRVADQKSVDSA 204
Query: 424 VIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
++ ++ +K L YL+ F L+ +F
Sbjct: 205 ILAVLK---KEKFLTVYLKTKFYLKKGEF 230
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 101 bits (242), Expect = 9e-21
Identities = 64/147 (43%), Positives = 77/147 (52%)
Frame = +1
Query: 58 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 237
+ R ++TPGTV I+LAGR GKR TGPF N PLRR+ Q YVIGTS
Sbjct: 84 KLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTS 143
Query: 238 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVD 417
TKVD+ L DD YF +GE A K+EK + +K DQK VD
Sbjct: 144 TKVDISGVTLD-KFDDKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVD 199
Query: 418 EAVIKAIRLRPDKKTLRGYLRASFGLR 498
A+IKAI P+ KT YL A F L+
Sbjct: 200 AALIKAIEAVPELKT---YLGARFSLK 223
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 101 bits (241), Expect = 1e-20
Identities = 54/132 (40%), Positives = 73/132 (55%)
Frame = +1
Query: 40 FSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQR 219
F+ H RR R ++TPG V ILLAGRH KR TGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 220 YVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKA 399
YVI T T++ + + K+P+ L+D +F + IFA +++KY S+ RK
Sbjct: 146 YVIATKTRIKIKNIKIPSQLNDEFFRRQDLKTKKSV-----DKIFAEEEKKYTVSDDRKK 200
Query: 400 DQKLVDEAVIKA 435
QK VD A+I A
Sbjct: 201 LQKQVDTALIAA 212
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 98.3 bits (234), Expect = 9e-20
Identities = 66/149 (44%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Frame = +1
Query: 58 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 237
+ R ++TPGTV ILLAGR GKR TGPF N P+RR+ Q YVI TS
Sbjct: 73 KLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATS 132
Query: 238 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQKL 411
TKVD+ + DD YF +GE +F T+KE K +P E +K DQK+
Sbjct: 133 TKVDISGVNV-EKFDDKYF---SRDKKQKAKKTEGE-LFETEKEATKNLP-EFKKEDQKV 186
Query: 412 VDEAVIKAIRLRPDKKTLRGYLRASFGLR 498
VD +IKAI PD KT YL A F LR
Sbjct: 187 VDAELIKAIEAVPDLKT---YLGARFSLR 212
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 96.3 bits (229), Expect = 4e-19
Identities = 48/115 (41%), Positives = 69/115 (60%)
Frame = +1
Query: 166 FTGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGE 345
F GPF+ N P+RRI Q++V+ TSTK+D+ K+PA + D YF + +
Sbjct: 13 FLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYFKRTKYFGK------EKK 66
Query: 346 DIFATKKEKYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
DIF K++Y ++ RKADQK +D AV+ +I+ D K L GYLR +FGL Q+
Sbjct: 67 DIFEQGKQEYTLTDARKADQKTIDTAVLGSIKKHTDGKLLAGYLRTNFGLSKRQY 121
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 84.2 bits (199), Expect = 2e-15
Identities = 60/157 (38%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Frame = +1
Query: 49 HVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVI 228
H + RP+L PGT+ ILLAGR GKR TGPF N PLRR+ RYVI
Sbjct: 50 HPTKLRPSLQPGTILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVI 109
Query: 229 GTSTKVDLG--DFK-LPAHLDDAYFXXXXXXXXXXXXXXQGEDIF---ATKKEKYVPSEQ 390
TS+ VDL D K L YF +GE+ F K EK +
Sbjct: 110 ATSSTVDLNGVDQKTLEKVSQPEYF------TREKAEQKKGEEAFFKQGEKPEKKKVASA 163
Query: 391 RKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLRS 501
R ADQK +D+A++ I+ P L YL ++F LR+
Sbjct: 164 RAADQKAIDQALLATIKKEP---FLGSYLASTFSLRT 197
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 81.4 bits (192), Expect = 1e-14
Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Frame = +1
Query: 58 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 237
+ R +L PG VCILLAG + GKR TGP+A N P+RR+ Y+I TS
Sbjct: 34 KLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGVPVRRVNPAYIIATS 93
Query: 238 TKVDLGDFKLPAHLDDAY-FXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLV 414
TKVD+ + D+ + QGE+ TK + V SE+RK Q+ +
Sbjct: 94 TKVDVSKADVSKFTDEYFKVDRSKLKKSKDAFMDQGEE---TKVNRVV-SEERKKTQQAL 149
Query: 415 DEAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
D ++I +I+ P + YL+ F L S F
Sbjct: 150 DASIIPSIQSNP---LMMSYLKTRFTLTSGMF 178
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 79.8 bits (188), Expect = 3e-14
Identities = 54/149 (36%), Positives = 76/149 (51%)
Frame = +1
Query: 55 RRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGT 234
++ R +L PGTV ILLAGR GKR +GPF N PLRR+ RYVI T
Sbjct: 28 QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIAT 87
Query: 235 STKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLV 414
STKV + + + YF + ++F ++ K + +E R DQK+V
Sbjct: 88 STKVSVEGVNV-EKFNVEYF----AKEKLTKKEKKEANLFPEQQNKEIKAE-RVEDQKVV 141
Query: 415 DEAVIKAIRLRPDKKTLRGYLRASFGLRS 501
D+A+I I+ P L+ YL ASF L++
Sbjct: 142 DKALIAEIKKTP---LLKQYLSASFSLKN 167
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 77.4 bits (182), Expect = 2e-13
Identities = 49/151 (32%), Positives = 68/151 (45%)
Frame = +1
Query: 58 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 237
+ RP++ GT+ ILLAG G R TGP+A N PL R+ QRYVI TS
Sbjct: 67 KLRPSIKSGTIVILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATS 126
Query: 238 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVD 417
T +D+ + +D+AYF D ++K E R ADQK +D
Sbjct: 127 TSIDVSKVDV-KKIDNAYFRKPQKKKKTDVMEV---DTAKKDEQKTKAIEARIADQKAID 182
Query: 418 EAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
++ I P L YL+ F L+ Q+
Sbjct: 183 AVLLPVIEKEP---LLSSYLKVKFSLKKGQY 210
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 67.3 bits (157), Expect = 2e-10
Identities = 62/168 (36%), Positives = 71/168 (42%), Gaps = 23/168 (13%)
Frame = +1
Query: 64 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTK 243
R L PGTV ILLAGR GKR TGPF N PLRR+ RYVI TS K
Sbjct: 36 RSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRRVNARYVIATSQK 95
Query: 244 VDLG---DFKLPAHLDDAYF--XXXXXXXXXXXXXXQGE------------------DIF 354
VDL + K+ YF QGE DI
Sbjct: 96 VDLAGIDEAKINEIAQPKYFTAEKSKEKAGEEAFFKQGEKPQVRLGNSELEHGAHNADIV 155
Query: 355 ATKKEKYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLR 498
KKE S R ADQK +D+A+I I+ + L YL +SF LR
Sbjct: 156 MQKKE---VSSSRVADQKAIDKALIANIK---KVEFLASYLASSFTLR 197
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 63.3 bits (147), Expect = 3e-09
Identities = 34/75 (45%), Positives = 39/75 (52%)
Frame = +1
Query: 70 NLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTKVD 249
++TP TV I+L GRH GKR TGP A N PL R+ Q VI T TKVD
Sbjct: 8 SITPQTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVD 67
Query: 250 LGDFKLPAHLDDAYF 294
+ K HL DA F
Sbjct: 68 ICKVKTSKHLTDASF 82
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 62.5 bits (145), Expect = 5e-09
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +1
Query: 31 GKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRI 210
G+ ++ V + R +L PG V ILL G + GKR TGPF+FN PLRR+
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRV 89
Query: 211 PQRYVIGTSTKV 246
RYVI TST V
Sbjct: 90 NSRYVIATSTNV 101
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 61.7 bits (143), Expect = 9e-09
Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 3/146 (2%)
Frame = +1
Query: 61 TRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 240
T + PG V ILL+GR GKR TGPF N PL+R+ YVI TST
Sbjct: 54 TLRKIVPGQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKINGVPLKRVNSAYVIPTST 113
Query: 241 KVDLGDFKLPAHLDDAYF---XXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKL 411
KVD+ ++D YF +GE + + + ++ QK
Sbjct: 114 KVDVTGVN-ANQINDDYFKRTQAQRRKNEQGFWAKRGELTVEQQTAEKTRLDGKRNTQKS 172
Query: 412 VDEAVIKAIRLRPDKKTLRGYLRASF 489
VD A+I AI+ + L+ YL A F
Sbjct: 173 VDAALITAIK---KTQLLKQYLGARF 195
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 58.8 bits (136), Expect = 7e-08
Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 11/156 (7%)
Frame = +1
Query: 64 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 240
R + PG + I+LAGR G+R +GP +N P+RRI RYVI TST
Sbjct: 30 RKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATST 89
Query: 241 KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGED-----IFATKK-----EKYVPSEQ 390
VD+ + + G+ A KK +K + S+
Sbjct: 90 TVDISSVDTAPITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKTSKAGKKTLVSDA 149
Query: 391 RKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGLR 498
R QK +D A+I AI+ K GYLR+ F ++
Sbjct: 150 RAQLQKKIDAALIAAIKKDAQGKEKAGYLRSVFTVK 185
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 50.4 bits (115), Expect = 2e-05
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +1
Query: 55 RRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGT 234
R+ R ++ G V I+L G+H GKR GP+ N PL+R+ RY+I T
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVT 127
Query: 235 STKV 246
ST +
Sbjct: 128 STNI 131
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 44.4 bits (100), Expect = 0.002
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = +1
Query: 169 TGPFAFNACPLRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYF 294
TG F N PLRR+ Q YVI TSTKVD+ + DD YF
Sbjct: 172 TGSFKINGVPLRRVNQAYVIATSTKVDIPKVNV-EKFDDKYF 212
>UniRef50_A0EZZ8 Cluster: 60S ribosomal protein L6; n=5;
Euteleostomi|Rep: 60S ribosomal protein L6 -
Scophthalmus maximus (Turbot)
Length = 54
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +1
Query: 364 KEKYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGYLRASFGL 495
KEKY +EQRK DQK VD ++ ++ P LRGYLR+SF L
Sbjct: 3 KEKYQLTEQRKEDQKAVDAQLLTLVKKTPQ---LRGYLRSSFCL 43
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 43.2 bits (97), Expect = 0.004
Identities = 25/76 (32%), Positives = 35/76 (46%)
Frame = +1
Query: 61 TRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTST 240
TRP+L GTV I++ G H GKR GP P+ I Q Y+I TST
Sbjct: 52 TRPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGP----VVPVNEISQDYLIATST 107
Query: 241 KVDLGDFKLPAHLDDA 288
+++ A ++ A
Sbjct: 108 SIEVAANATEAQVEAA 123
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 42.3 bits (95), Expect = 0.006
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +1
Query: 52 VRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIG 231
VRRT +L G V ++L G A +R GP + N PL RI +RY++
Sbjct: 22 VRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSINGIPLFRIDERYLLA 79
Query: 232 TSTKVDL 252
TST +DL
Sbjct: 80 TSTVLDL 86
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 41.9 bits (94), Expect = 0.008
Identities = 41/142 (28%), Positives = 61/142 (42%)
Frame = +1
Query: 19 CRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACP 198
C++ KS + + N TP TV I++ G+H +R TGP A N
Sbjct: 116 CKAMAKSPAFKHEKAVCNSTPETVLIIITGQH--RRVVFLKQLSRGFLLITGPLALNLVL 173
Query: 199 LRRIPQRYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYV 378
L R Q+ V+ TST ++ D YF QG+ IF +K+KY
Sbjct: 174 LYRTHQKSVVITSTTINT--------QTDVYF---KMKQLHKPRHQQGK-IFDMEKDKY- 220
Query: 379 PSEQRKADQKLVDEAVIKAIRL 444
+Q KAD K +D ++ +L
Sbjct: 221 GIKQCKADHKTLDSQILPKRKL 242
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 34.7 bits (76), Expect = 1.2
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 61 TRPNLTPGTVCILLAGRHAGKR 126
++P + PG VCI+L GRHAGK+
Sbjct: 2 SQPIIKPGLVCIVLQGRHAGKK 23
>UniRef50_UPI0000D55A40 Cluster: PREDICTED: similar to CG33232-PC,
isoform C; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG33232-PC, isoform C - Tribolium castaneum
Length = 2178
Score = 33.1 bits (72), Expect = 3.8
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -1
Query: 294 KVGIVKMRR*LEIAQVYLSR-CSNDIALRNPAQGTRVESKRSSEE*QTTRQHSNE 133
K GI+K RR L+ +QV R CS D+A + P + ++++R S + TR S E
Sbjct: 392 KQGILKKRRSLDESQVMRHRSCSPDVANKAPDSRSILKNQRRSSMEELTRTQSPE 446
>UniRef50_Q69TX1 Cluster: Putative uncharacterized protein
P0021C04.16; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0021C04.16 - Oryza sativa subsp. japonica (Rice)
Length = 134
Score = 31.9 bits (69), Expect = 8.7
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 405 EAGRRGRDKGDQTPARQEDTPRLPQG-LVRAPIESV 509
E GRR R+KG +P Q R P G L AP E V
Sbjct: 34 EEGRRAREKGSSSPLLQRPPSRPPSGALATAPREGV 69
>UniRef50_P45744 Cluster: Isochorismate synthase dhbC; n=18;
Bacteria|Rep: Isochorismate synthase dhbC - Bacillus
subtilis
Length = 398
Score = 31.9 bits (69), Expect = 8.7
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -1
Query: 231 SNDIALRNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAHCAGSEVRSRPTH 52
SN +A P VE +R + E + + +EH +A A C EV +P+
Sbjct: 213 SNPLAGSRPRSNDPVEDQRRAAELLSPAKDLHEHAVVADAVAAALRPFCRTLEVPEKPSL 272
Query: 51 MFTETL 34
+ TET+
Sbjct: 273 IKTETM 278
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,442,178
Number of Sequences: 1657284
Number of extensions: 8400078
Number of successful extensions: 25113
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 24249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25092
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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