Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N03
         (510 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   0.68 
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    23   1.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   1.6  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.4  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   6.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
 Frame = +3

Query: 84  HSVHSVG-----GQTRWQACRARWSVAEWSATLHWTFCFQRVSPAQD 209
           HS H  G     G+T       RW   E     +W FC +R + + +
Sbjct: 315 HSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDE 361


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 409 LVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
           LVD+ +I       D    R YLR + G +S QF
Sbjct: 45  LVDQVMILETMTPLDFMDFRCYLRPASGFQSLQF 78


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 409 LVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
           LVD+ +I       D    R YLR + G +S QF
Sbjct: 105 LVDQVMILETMTPLDFMDFRCYLRPASGFQSLQF 138


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 409 LVDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
           LVD+ +I       D    R YLR + G +S QF
Sbjct: 105 LVDQVMILETMTPLDFMDFRCYLRPASGFQSLQF 138


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 385 EQRKADQKLVDEAVIKAIRLRPDKK 459
           ++ K D+K  D   ++A+  RP  K
Sbjct: 112 DENKLDKKNDDSPALRALLTRPQAK 136


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 385 EQRKADQKLVDEAVIKAIRLRPDKK 459
           ++ K D+K  D   ++A+  RP  K
Sbjct: 112 DENKLDKKNDDSPALRALLTRPQAK 136


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 385 EQRKADQKLVDEAVIKAIRLRPDKK 459
           ++ K D+K  D   ++A+  RP  K
Sbjct: 112 DENKLDKKDDDSPALRALLTRPQAK 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,423
Number of Sequences: 336
Number of extensions: 1853
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)