Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N03
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   113   7e-26
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    27   6.0  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  113 bits (272), Expect = 7e-26
 Identities = 64/150 (42%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
 Frame = +1

Query: 64  RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 240
           R  LTPGTV I+LAGRH GKR               TGP   N  PLRRI Q +VI TS 
Sbjct: 68  RKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSL 127

Query: 241 KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVDE 420
           KV++   K+P H++D YF               G++IFA+ K +Y  SEQRK D K VD 
Sbjct: 128 KVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVDA 181

Query: 421 AVIKAIRLRPDKKTLRGYLRASFGLRSSQF 510
            ++ AI+  P+ K L GYL   F L  +Q+
Sbjct: 182 PILAAIKKHPEHKFLFGYLGTRFSLGKNQY 211


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 56  VGRDLTSL--PAQCAFCWR-ADTLASVSCSLECC 148
           V R+ T+L   ++C F W  A T A+ +CS  CC
Sbjct: 74  VNRNCTALVPDSKCVFKWAFATTAAATACSCTCC 107


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +1

Query: 343 EDIFATKKEKYVPSEQRKADQK-LVD-EAVIKAIRLRPDKKT 462
           E+ FA  + KY   +QRK +++ L+D E+++  +  +PD  T
Sbjct: 124 EEKFAYNRRKYESRKQRKTEERPLIDIESLMPMLESKPDVAT 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,566,958
Number of Sequences: 27780
Number of extensions: 194216
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)