Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N03
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 240 SRCSN-DIALRNPAQGTRVESKRSSEE*QTTRQHSNEHDTLASVSARQQNAH 88
           SRC+N D    N       +++ SS+   +  Q++N+H+  A  S++  N H
Sbjct: 412 SRCANFDNQDNNHYNHNHNQARHSSK---SDNQNNNQHNDQAHHSSKSNNRH 460


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 103 PTECTLCRE*G*VSSY 56
           PTEC  CR  G   +Y
Sbjct: 37  PTECVFCRNNGEEEAY 52


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 402 PEAGRRGRDKGDQTPARQEDTPRLPQG 482
           P+  R  +D+G    +   DT R P G
Sbjct: 254 PQPDRTSKDQGTIGESEVFDTTRYPHG 280


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 248 TWAISSYRRI 277
           TW I+SY RI
Sbjct: 71  TWTITSYHRI 80


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 78  SRHSVHSVGGQTRWQAC 128
           S+ SVH   GQT  Q C
Sbjct: 366 SQTSVHYSNGQTHSQLC 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,749
Number of Sequences: 438
Number of extensions: 1968
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)