Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N03
         (510 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...   103   9e-23
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...   103   9e-23
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    98   3e-21
At3g08670.1 68416.m01007 expressed protein                             30   1.0  
At5g44290.1 68418.m05421 protein kinase family protein contains ...    29   2.4  
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    28   4.2  
At4g20020.2 68417.m02930 expressed protein                             27   5.5  
At5g62910.1 68418.m07894 expressed protein predicted proteins, A...    27   7.3  
At3g55160.1 68416.m06126 expressed protein                             27   7.3  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  103 bits (246), Expect = 9e-23
 Identities = 64/147 (43%), Positives = 77/147 (52%)
 Frame = +1

Query: 58  RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 237
           + R ++TPGTV I+LAGR  GKR              TGPF  N  PLRR+ Q YVIGTS
Sbjct: 84  KLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTS 143

Query: 238 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVD 417
           TKVD+    L    DD YF              +GE   A K+EK    + +K DQK VD
Sbjct: 144 TKVDISGVTLD-KFDDKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVD 199

Query: 418 EAVIKAIRLRPDKKTLRGYLRASFGLR 498
            A+IKAI   P+ KT   YL A F L+
Sbjct: 200 AALIKAIEAVPELKT---YLGARFSLK 223


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  103 bits (246), Expect = 9e-23
 Identities = 64/147 (43%), Positives = 77/147 (52%)
 Frame = +1

Query: 58  RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 237
           + R ++TPGTV I+LAGR  GKR              TGPF  N  PLRR+ Q YVIGTS
Sbjct: 84  KLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTS 143

Query: 238 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVD 417
           TKVD+    L    DD YF              +GE   A K+EK    + +K DQK VD
Sbjct: 144 TKVDISGVTLD-KFDDKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVD 199

Query: 418 EAVIKAIRLRPDKKTLRGYLRASFGLR 498
            A+IKAI   P+ KT   YL A F L+
Sbjct: 200 AALIKAIEAVPELKT---YLGARFSLK 223


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 59/146 (40%), Positives = 76/146 (52%)
 Frame = +1

Query: 58  RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 237
           + + ++TPGTV I+LAGR  GKR              TGPF  N  PLRR+ Q YVIGTS
Sbjct: 84  KLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTS 143

Query: 238 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVD 417
           TK+D+         DD YF              +GE   A K+EK    +++K DQK VD
Sbjct: 144 TKIDISGVN-TEKFDDKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVD 199

Query: 418 EAVIKAIRLRPDKKTLRGYLRASFGL 495
            A+IK+I   P+   L+ YL A F L
Sbjct: 200 AALIKSIEAVPE---LKVYLGARFSL 222


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 3/134 (2%)
 Frame = -2

Query: 464 SVFLSGRSLIAFITASSTSFWSALRCSDGTYFSFLVAKMSSPCXXXXXXXXXXXXXLK*A 285
           S F SGRS  + +  SS S  S +R S  +  S   A+ S+P              ++  
Sbjct: 168 SSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPG 227

Query: 284 SSRCAGSLKSPRSTLVDVPMT*RCGILRRGHALKAKGP-VKSSRPLGNTPTSTTRLPA-- 114
           SS  + S+   R +L   P T           L A  P + +SRP     T T R P+  
Sbjct: 228 SS--SSSMDKARPSLSSRPST-----PTSRPQLSASSPNIIASRPNSRPSTPTRRSPSST 280

Query: 113 CLPANRMHTVPGVR 72
            L A    T+ G R
Sbjct: 281 SLSATSGPTISGGR 294


>At5g44290.1 68418.m05421 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 203 RRGHALKAKGPVKSSRPLGNTPTSTTRLPACLPAN 99
           RR H  K   PVK++ P  +T      L +C+P N
Sbjct: 468 RRSHERKLIPPVKANNPSLSTAVENPYLRSCVPGN 502


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 133 ARHACQRVCPPTECTLCRE 77
           ARHAC+R C   EC  C E
Sbjct: 411 ARHACRRRCCDGECPPCSE 429


>At4g20020.2 68417.m02930 expressed protein
          Length = 406

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 402 PEAGRRGRDKGDQTPARQEDTPRLPQG 482
           P+A +R RD  +  PA Q  + + PQG
Sbjct: 377 PQADQRNRDWNNNNPAGQPGSDQFPQG 403


>At5g62910.1 68418.m07894 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 327

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 68  LTSLPAQCAFCWRADTLASVSCSLECCRVVCYSSLDLLLSTRVPC-AGFR 214
           L +L  Q +F       +SV+    C   +CY  LDL  S  +PC  GFR
Sbjct: 227 LPNLAKQLSFPELDKRFSSVAIPSSC--PICYEDLDLTDSNFLPCPCGFR 274


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +2

Query: 83  AQCAFCWR-----ADTLASVSCSLECCRVVC-YSSLDLLLSTR 193
           AQC FCW      AD ++ +  + + C  +C +SSL  L   R
Sbjct: 279 AQCIFCWSSVVRLADIVSKIPFAGDICSEICSFSSLSRLCLIR 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,014,457
Number of Sequences: 28952
Number of extensions: 179446
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)