Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N02
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   1.9  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   3.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   7.8  

>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 89  ITAFLKIFGIC--LMVLCPLNRSLSTLVPP 6
           +T FL I+GIC  + +  P+   LST+  P
Sbjct: 11  LTLFLFIYGICIYICIAVPIRSDLSTVFEP 40


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 19  VDKLRFNGQSTIKHIPKIFKNAVITQLR 102
           ++ +RF  Q TI H+  ++KN ++  L+
Sbjct: 1   MENIRFEVQLTILHVEGLWKNGLLRSLK 28


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -1

Query: 153  LYRVLAVCPRLYPCLLYS*LRNNCVFKNLWNMFNGALSIES 31
            ++ +L++C  +  C+    L     F + WNMF+  +++ S
Sbjct: 1303 IFLILSICYTINICVKVYGLSFYYFFHSFWNMFDVVVTLGS 1343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,674
Number of Sequences: 5004
Number of extensions: 26959
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)