Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N02
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical pr...    27   3.9  

>Z49207-8|CAJ85773.1|  455|Caenorhabditis elegans Hypothetical
           protein R07E3.5b protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -2

Query: 164 HYFNFIEY*LCVRGFTRVYYILNCVITAFLKIFGICLMVLCPLNRSLSTLVP 9
           H+FN+    L + GF   YY+L   +   + +FGI + VL  ++ S+  LVP
Sbjct: 93  HFFNWQLTLLWIAGFMFRYYVL---VPCRIALFGIAI-VLMIVSTSIIGLVP 140


>Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical
           protein R07E3.5a protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -2

Query: 164 HYFNFIEY*LCVRGFTRVYYILNCVITAFLKIFGICLMVLCPLNRSLSTLVP 9
           H+FN+    L + GF   YY+L   +   + +FGI + VL  ++ S+  LVP
Sbjct: 150 HFFNWQLTLLWIAGFMFRYYVL---VPCRIALFGIAI-VLMIVSTSIIGLVP 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,355,737
Number of Sequences: 27780
Number of extensions: 145458
Number of successful extensions: 266
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)