Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N01
         (496 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   1.5  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   1.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   2.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   2.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   4.6  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 157 LKHRTTEQRHSVSPKSSPQALGMSLLMQTRIQLASN 50
           +KH+  +     +P+SSP     SL  Q+    AS+
Sbjct: 141 MKHKKEQMNKVSTPRSSPAETASSLSPQSVASTASS 176


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 157 LKHRTTEQRHSVSPKSSPQALGMSLLMQTRIQLASN 50
           +KH+  +     +P+SSP     SL  Q+    AS+
Sbjct: 132 MKHKKEQMNKVSTPRSSPAETASSLSPQSVASTASS 167


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 157 LKHRTTEQRHSVSPKSSPQALGMS 86
           +K +  E+   V+PK+SP    MS
Sbjct: 138 MKFKKEEKNKVVTPKTSPNEASMS 161


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 157 LKHRTTEQRHSVSPKSSPQALGMS 86
           +K +  E+   V+PK+SP    MS
Sbjct: 158 MKFKKEEKNKVVTPKTSPNEASMS 181


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 137 TTAFSIPEVVPSGSGYVTSDANSN 66
           TT FS  EVV   +    SD+N+N
Sbjct: 441 TTVFSNVEVVQEEAKKEESDSNNN 464


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,737
Number of Sequences: 336
Number of extensions: 2641
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11630247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)