Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N01
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    27   2.1  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   2.7  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   8.3  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   8.3  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.3  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.3  

>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -2

Query: 147 EQLNNGIQYPRSRPLRLWV 91
           +Q+N+ I+YP +RP+ +W+
Sbjct: 112 DQVNSFIKYPFNRPVEIWL 130


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -1

Query: 244 PSPKRVSHKESHLTNDHQLYPASAHIEGSLKHRTTEQRHSVSPKSSPQALGMSLLMQTRI 65
           P+   +  ++ + T   Q Y   AH+ G LKH    QR     K +   L  + ++ T  
Sbjct: 39  PTQAALEKEDFNTTAKDQAY--FAHLLGMLKHHNANQRQETLEKLTQYVLSHTSILTTST 96

Query: 64  QL 59
            L
Sbjct: 97  AL 98


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = +1

Query: 118 GILNAVVQLFGVLTTLLYERMLGTVGDRWSNVTLCAILVLGTVI 249
           G+L  +V +  +   ++   +    G R S +  CA+ ++G ++
Sbjct: 63  GLLTGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAVYIIGIIV 106


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 397 LFTNDLAHELLGGNKT*EALFFFRGISCYCKFTHCS 290
           L+T D  HEL+  N+T EA   F     + K   C+
Sbjct: 361 LYTTDSLHELVVNNETREASLVFLEKGDFEKALECA 396


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 490 DVSSSTLCYTTLKEVLLSNHIT 425
           D SSS++  T +KE+L S H T
Sbjct: 525 DASSSSIPVTDIKEILPSQHDT 546


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 117 GDTECRCSVVRCFNDPS 167
           G T   CSVV CF DP+
Sbjct: 74  GITGYSCSVVYCFKDPN 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,884
Number of Sequences: 5004
Number of extensions: 45083
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)