Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N01
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0131 + 888247-888771,889092-889154                               33   0.13 
03_05_0703 - 26942117-26942221,26943765-26945579                       31   0.51 
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439...    29   2.7  
03_01_0138 - 1089063-1089266,1089590-1089671,1089937-1090390,109...    28   4.7  
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545...    27   8.3  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    27   8.3  
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979...    27   8.3  

>05_01_0131 + 888247-888771,889092-889154
          Length = 195

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -3

Query: 266 DLIAAVMTVPKTSIAQRVTFD--QRSPTVPSIRSYRRVVKTPNN*TTAFSIPEVVPSGSG 93
           +L   ++T P T+I+    F   ++ PT P   +       P +  T FS+   VP+G  
Sbjct: 43  ELPPIIITTPPTAISGESDFSVLRKVPTGPDPITSDPPPPPPPSTPTQFSVLRKVPTGPD 102

Query: 92  YVTSDANSNPTGK*PVIKNPSS 27
            +TSD    P  + PV++   S
Sbjct: 103 PITSDPPPPPLSEFPVLREVPS 124


>03_05_0703 - 26942117-26942221,26943765-26945579
          Length = 639

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 91  YPEPEGTTSGILNAVVQLFGVLTTLLYERMLGTVGDRWSNVTLCAIL 231
           +PE  G   G+L   V L G + T LY  + G   D  S V L A L
Sbjct: 152 FPEDRGVVLGLLKGFVGLSGAIFTQLYRAIYGADDDGASLVLLMAWL 198


>04_04_0345 -
           24542869-24543540,24543725-24543805,24543845-24543910,
           24543991-24544098,24545101-24545436,24545516-24545586,
           24546105-24546252
          Length = 493

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 22  SILLGFFMTGYLPVGFEFASEVTYPEP-EGTTSGILNAVVQLFGVLTTLLYERMLGTVGD 198
           ++ + FF  G  PV +   SE+ YPE   G   G+   V  +  ++    +  ++G VG 
Sbjct: 379 ALYIAFFSPGMGPVPWAVNSEI-YPEAYRGMCGGMSATVNWVSNLIVAQTFLSIVGLVGT 437

Query: 199 RWSNVTLCAILVLGTVITA 255
             + + +  I VL  +  A
Sbjct: 438 GLTFLIIAGIAVLAFIFVA 456


>03_01_0138 -
           1089063-1089266,1089590-1089671,1089937-1090390,
           1091094-1091634
          Length = 426

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 296 MGKLTIATYTSKEKKSLLSF 355
           +GK TIA + SKE+KS  SF
Sbjct: 282 LGKTTIAAWASKEEKSTTSF 301


>09_06_0032 +
           20353789-20353963,20354240-20354340,20354426-20354560,
           20354633-20354714,20354829-20354896,20354984-20355073,
           20355133-20355257,20355384-20355717,20355841-20355957,
           20356058-20356485,20356564-20356813,20356944-20357194,
           20357278-20357587
          Length = 821

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = -3

Query: 230 SIAQRVTFDQRSPTVPSIRSYRRVVKTPNN*TTAFSIPEVVPSGSGYVTSDANS 69
           S+A +  FD  + T PS  ++R   + P     + S  E+    +G    D ++
Sbjct: 547 SLALKSWFDDSASTTPSSETFRYSTRRPEKVRKSLSPDEIADKSTGNAEEDKST 600


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 229 VSHKESHLTNDHQLYPASAHIEGSLKHRTTEQR 131
           V HK+S ++     Y A       L+H  TEQR
Sbjct: 277 VKHKKSGISGSTNSYNAVVRENAQLRHEVTEQR 309


>04_03_0809 +
           19896801-19897170,19897265-19897513,19897850-19897900,
           19898007-19898267,19898427-19898479,19898746-19898887,
           19898972-19899226,19899616-19900640
          Length = 801

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +1

Query: 7   VVYLSSILLGFFMTGYLPVGF 69
           VVYLSSIL  F   GYLP  F
Sbjct: 502 VVYLSSILSKFVDGGYLPFCF 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,611,391
Number of Sequences: 37544
Number of extensions: 282474
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)