Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_N01
(496 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 1e-16
SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49) 48 3e-06
SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047) 42 3e-04
SB_16510| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_58207| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.098
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91) 31 0.69
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 28 4.9
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6) 27 6.4
SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29) 27 8.5
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_40207| Best HMM Match : Glyco_hydro_18 (HMM E-Value=3.9) 27 8.5
>SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/97 (38%), Positives = 62/97 (63%)
Frame = +1
Query: 10 VYLSSILLGFFMTGYLPVGFEFASEVTYPEPEGTTSGILNAVVQLFGVLTTLLYERMLGT 189
++L +LGF T +LP+GFEFA+E+TYP PEGT++G+LNA Q FG+ ++ +++
Sbjct: 341 LFLVLAVLGFCSTSFLPLGFEFAAELTYPVPEGTSAGLLNAAAQCFGIFFIVVVGQLVHD 400
Query: 190 VGDRWSNVTLCAILVLGTVITAAIKSDLRRQAAQNNG 300
G N+ L L+LG + +++DL+R++ G
Sbjct: 401 AGALAGNLVLSGALLLGVGLLPLVRADLQRRSVDMYG 437
>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
Length = 358
Score = 48.4 bits (110), Expect = 3e-06
Identities = 31/81 (38%), Positives = 42/81 (51%)
Frame = +1
Query: 7 VVYLSSILLGFFMTGYLPVGFEFASEVTYPEPEGTTSGILNAVVQLFGVLTTLLYERMLG 186
V+Y++SIL GFF+ G +P+ FE E TYP EG TSG L V+ + M+
Sbjct: 226 VLYITSILGGFFVNGSIPLFFELGVESTYPIAEGITSGCLTFSNNFLQVIFYIF--PMVP 283
Query: 187 TVGDRWSNVTLCAILVLGTVI 249
G W N A++ GT I
Sbjct: 284 RFGTWWIN--WAALISCGTSI 302
>SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)
Length = 355
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/91 (29%), Positives = 39/91 (42%)
Frame = +1
Query: 7 VVYLSSILLGFFMTGYLPVGFEFASEVTYPEPEGTTSGILNAVVQLFGVLTTLLYERMLG 186
+ Y+S I F G +P+ E A+E TYP EG TSG+L V F + + + M
Sbjct: 259 IFYVSGISAMVFYCGTVPLVMEMAAECTYPVAEGITSGVLILSVYTFNLFFFIGF--MFP 316
Query: 187 TVGDRWSNVTLCAILVLGTVITAAIKSDLRR 279
W N L + + + A K R
Sbjct: 317 QASPLWMNWLLVSSSAICIPLIACFKGKYNR 347
>SB_16510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 7 VVYLSSILLGFFMTGYLPVGFEFASEVTYPEPEGTTSGIL 126
V++ S I+ G F G P+ FE A E YP EG T+ +L
Sbjct: 129 VLFASIIVGGLFFNGTTPLMFELAMECVYPVAEGITAVLL 168
>SB_58207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 33.5 bits (73), Expect = 0.098
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 7 VVYLSSILLGFFMTGYLPVGFEFASEVTYPEPEGTTSGILNAVVQLFGVLTTLLYE-RML 183
++Y+ I G F TG P+ FE E YP + +G L + GV+ +++ +
Sbjct: 383 LLYVYIIGSGLFFTGTTPLFFELIIEYVYPVSDSLATGNLLLWSSVLGVVFCVVFMFPSV 442
Query: 184 GTVGDRWSNVTLCAILV 234
W N+ C++ V
Sbjct: 443 DVTWMNWVNMAGCSVCV 459
>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
Length = 909
Score = 30.7 bits (66), Expect = 0.69
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 197 SPTVPSIRSYRRVVKTPN-N*TTAFSIPEVVPSGSGYVTSDANS 69
SPTVP+ + P+ +F+ P+V PSG GY S+AN+
Sbjct: 733 SPTVPTTLKKLLMEAIPSFKLNVSFTKPDVQPSGLGYEHSEANN 776
>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/50 (42%), Positives = 26/50 (52%)
Frame = +1
Query: 16 LSSILLGFFMTGYLPVGFEFASEVTYPEPEGTTSGILNAVVQLFGVLTTL 165
LS+IL GF +TGYL G VT P+ G+L VVQ+ L L
Sbjct: 626 LSAILGGFGITGYLVYGENVDQIVTSELPQ----GLLVTVVQILLCLAIL 671
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -1
Query: 241 SPKRVSHKESHLTNDHQLYPASAHIEGSLKHRTTEQ--RHSVSPKSSPQALGMSLLMQTR 68
S +RV H H Q PA H EG+ + E+ ++ P + P G L + R
Sbjct: 288 SGQRVQHATDHAPPQRQSTPAKVHAEGAAPTLSGEKSDHTALKPVTDPSGHGGERLAERR 347
>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
Length = 249
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -1
Query: 205 TNDHQLYPASAH---IEGSLKHRTTEQRHSVSP 116
T++HQL ASAH I+ + +H T RH +P
Sbjct: 41 TSNHQLVLASAHRRGIKNTFRHYKTPLRHHKTP 73
>SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)
Length = 1354
Score = 27.1 bits (57), Expect = 8.5
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 232 RVSHKESHLTNDHQLYPASAHIEGSLKHRTTEQRHSVS-PKSSPQAL--GMSLL 80
RV H H+ Q PA H EG+ T HS+S KS AL GMS L
Sbjct: 1294 RVQHATDHVPPRRQSTPAKVHAEGA---APTPAVHSMSGEKSDHTALKAGMSAL 1344
>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1273
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 263 LIAAVMTVPKTSIAQRVTFDQRSPTVPSIRS 171
++ AV + P+ + + VTFD+R P+V S
Sbjct: 632 VLPAVDSKPRVAFDENVTFDERKPSVTQSES 662
>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 125 SIPEVVPSGSGYVTSDANSNPTGK*PVIKNPSSML 21
SI EV+P G+ DA +P+ + NP+S+L
Sbjct: 19 SITEVLPVGTWQNLGDATGSPSTPAALYSNPTSLL 53
>SB_40207| Best HMM Match : Glyco_hydro_18 (HMM E-Value=3.9)
Length = 276
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 232 RVSHKESHLTNDHQLYPASAHIEGSLKHRTTEQRHSVSPKSSPQALGMS 86
RV H H+ + Q PA H EG+ + E+ + K AL ++
Sbjct: 221 RVQHATDHVPSRRQSAPAKVHAEGAAPTLSGEKSDHTALKVGLSALAVA 269
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,951,897
Number of Sequences: 59808
Number of extensions: 335864
Number of successful extensions: 816
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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