Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_N01
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    30   0.98 
At2g28120.1 68415.m03416 nodulin family protein similar to nodul...    29   2.3  
At3g02170.1 68416.m00190 expressed protein                             28   3.0  
At2g39210.1 68415.m04816 nodulin family protein similar to nodul...    28   3.0  
At3g29220.1 68416.m03665 hypothetical protein                          28   4.0  
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa...    28   4.0  
At5g41320.1 68418.m05022 expressed protein                             27   5.3  
At3g02430.1 68416.m00230 hypothetical protein contains Pfam prof...    27   5.3  
At3g56410.2 68416.m06274 expressed protein                             27   6.9  
At3g56410.1 68416.m06273 expressed protein                             27   6.9  
At2g38100.1 68415.m04677 proton-dependent oligopeptide transport...    27   6.9  
At5g44370.1 68418.m05433 transporter-related similar to vesicula...    27   9.2  

>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 182 SIRSYRRVVKTPNN*TT--AFSIPEVVPSGSGYVTS 81
           ++   RR V  P N +   AFS P++VPS SG +TS
Sbjct: 19  TVEDGRRGVSEPENMSRLRAFSAPDLVPSDSGSITS 54


>At2g28120.1 68415.m03416 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 577

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 4   GVVYLSSILLGFFMTGYLPVGFEFASEV 87
           G VY++SIL+GF     LP+ F   SE+
Sbjct: 428 GSVYIASILMGFSFGAQLPLLFAIISEL 455


>At3g02170.1 68416.m00190 expressed protein
          Length = 905

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 163 GSLKHRTTEQRHSVSPKSSPQALGMSLLMQTR 68
           GS+      Q+HSVSP++ P+ LG     QTR
Sbjct: 499 GSMTKSGRSQQHSVSPRTQPKKLGFE--KQTR 528


>At2g39210.1 68415.m04816 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 601

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 91  YPEPEGTTSGILNAVVQLFGVLTTLLYERMLG 186
           +PE  G   GIL   V L G + T LY    G
Sbjct: 145 FPESRGVVLGILKGYVGLSGAIITQLYRAFYG 176


>At3g29220.1 68416.m03665 hypothetical protein
          Length = 197

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 223 HKESHLTNDHQLYPASAHIEGSLKHRTTEQRHSVSPKSSPQALGMSLL 80
           H   HL N++     +  +  SLK R   Q++ + PK+  + L +  L
Sbjct: 60  HLHDHLKNEYITREDNVDLRQSLKDRFDHQKYVILPKAKHEWLNLRFL 107


>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 492

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 334 KKEPPKFYYLLVTREPNHL*IVLSLFFKLNQ*YDLKVKLL*EWYNT 471
           +K+P   +YL + R+  HL + +  FF +   Y + + LL E Y T
Sbjct: 207 EKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYGVPLHLLRELYET 252


>At5g41320.1 68418.m05022 expressed protein 
          Length = 515

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 243 RPQNEYRTKSHI*PTITNCTQHPLI*KGR*NTEQLNNGIQ-YPRSRPLR 100
           R +N++   S   P  +N TQHP+I      + Q++NG +   R +P++
Sbjct: 15  RKENDFEDSSSDDPD-SNSTQHPIIHNPNLESNQIDNGTKTVTREQPVK 62


>At3g02430.1 68416.m00230 hypothetical protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 219

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 31  LGFFMTGYLPVGFEFASEVTYPEPEGTTSGILNAVVQLFGVLTTLLY 171
           L   + G + +  ++ ++  YP PE  T  +L+ V    GV+ +LL+
Sbjct: 152 LSVLVFGAVALRDKYITDCFYPSPEAETKHVLDIVPVGVGVMCSLLF 198


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 205 TNDHQLYPASAHIEGSLKHRTTEQRHSVSPKSSPQALGMSLL 80
           T  H +Y   +++  +  HR+T   HSV    S  +   S+L
Sbjct: 314 TPHHSVYSERSYVPAAAPHRSTYSEHSVGISKSDTSSEKSIL 355


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 205 TNDHQLYPASAHIEGSLKHRTTEQRHSVSPKSSPQALGMSLL 80
           T  H +Y   +++  +  HR+T   HSV    S  +   S+L
Sbjct: 267 TPHHSVYSERSYVPAAAPHRSTYSEHSVGISKSDTSSEKSIL 308


>At2g38100.1 68415.m04677 proton-dependent oligopeptide transport
           (POT) family protein low similarity to SP|P46032 Peptide
           transporter PTR2-B (Histidine transporting protein)
           {Arabidopsis thaliana}; contains Pfam profile PF00854:
           POT family
          Length = 521

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 25  ILLGFFMTGYLPVGFEFASEVTYPEPEGTTSGILNAVVQLFGVLTTLLYERMLGTV-GDR 201
           ILLG  +TG     F    E T PE       +LN  V   G+++ +    ++G+V G +
Sbjct: 406 ILLGS-ITGIYENSFALYLEETVPEELSQYMVLLNVGVCGVGIMSNIALVSLVGSVSGGK 464

Query: 202 WSNVTL 219
           W   T+
Sbjct: 465 WFQDTI 470


>At5g44370.1 68418.m05433 transporter-related similar to vesicular
           glutamate transporter 2 [Mus musculus] GI:15811369,
           Na-dependent inorganic phosphate cotransporter [Homo
           sapiens] GI:7328923; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 432

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 4   GVVYLSSILLGFFMTGYLPVGFEFASEVTYPEPEGTTSGILNAVVQLFGVLTTLLYERML 183
           GV+  SS+ LGF   G    GF        P   G   G+ N    L G++   L  ++L
Sbjct: 330 GVILCSSVALGFLALG--RAGFAVNHMDIAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLL 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,134,304
Number of Sequences: 28952
Number of extensions: 233326
Number of successful extensions: 515
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)