Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M24
         (549 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   0.76 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   3.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.1  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   7.1  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 304 PHYNLHHPKT-CRSPHDYLHRRLICREALASSRLMVKTQHS 185
           PHYN+HH  T  +SP+    +   C     S +L   T  S
Sbjct: 25  PHYNIHHGATPPQSPNQQYTKD--CSSPTPSDKLNTSTTSS 63


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
 Frame = +1

Query: 67  CNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGA 246
           C +R  +F  H+Y   +    + +   ++   + T  +D N  S   G     L   +GA
Sbjct: 217 CQIRGTFFVSHKYTNYSAVQDLHRRGHEIAVFSLTHKEDPNYWSQ--GSYDDWLAEMAGA 274

Query: 247 GEGSRVEIDKFLGDVDYS--EATNPYISL--SKTFSEMNPDFF 363
               R+ +++F    D S      PY+ +  +K F  M   FF
Sbjct: 275 ----RLIVERFANITDGSIIGVRAPYLRVGGNKQFEMMADQFF 313


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
 Frame = +1

Query: 67  CNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGA 246
           C +R  +F  H+Y   +    + +   ++   + T  +D N  S   G     L   +GA
Sbjct: 224 CQIRGTFFVSHKYTNYSAVQDLHRRGHEIAVFSLTHKEDPNYWSQ--GSYDDWLAEMAGA 281

Query: 247 GEGSRVEIDKFLGDVDYS--EATNPYISL--SKTFSEMNPDFF 363
               R+ +++F    D S      PY+ +  +K F  M   FF
Sbjct: 282 ----RLIVERFANITDGSIIGVRAPYLRVGGNKQFEMMADQFF 320


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/45 (17%), Positives = 21/45 (46%)
 Frame = +1

Query: 67  CNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSS 201
           C+++A +F  H+Y   +    + +   ++   + T   D+   S+
Sbjct: 225 CDIKATFFVSHKYTNYSAVQEMHRKGHEIAVHSITHNDDERFWSN 269


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +2

Query: 395 NILWMRNSRALPVSTKARL 451
           +++W R+ R LP++ K ++
Sbjct: 541 SVVWERDGRQLPINRKQKV 559


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 293 STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTFL 183
           STS    +++ +  SP     R    ITP+G +T+ L
Sbjct: 228 STSASPPTVNIKKESPQMQSYRPTGNITPHGSNTSSL 264


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 133 DKTSMKLLKEAYTSGKDKN 189
           DK   K +KE YT  ++ N
Sbjct: 262 DKKKKKTIKEKYTEDEELN 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,443
Number of Sequences: 336
Number of extensions: 2668
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)