Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M24
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   4.2  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    26   4.2  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   4.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   4.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   4.2  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   5.6  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   5.6  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    25   9.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   9.7  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   9.7  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    25   9.7  

>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 368 IVKKSGFISEKVLLRLMYGLVASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTT 189
           IVK + F  EKV ++ ++ + A + ST+    S   +  SP   L R  S++  N + +T
Sbjct: 184 IVKMTSFTGEKVQVQRLHCMNARVPSTAIGIFSHGAKQSSPLQQLGRIGSMVQINSDLST 243


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 292 DYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNQYTLDEKFTSSSRQYQSE 447
           D  +A   + S SK F+E NP   T ++    G  +TL  + T  ++ ++ +
Sbjct: 141 DSLKALRQFFS-SKDFTETNPPIITSSDCEGAGEVFTLTPQETHKNKSFERD 191


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 220 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNP 315
           L+   K G+G G   + + FLGD+ Y  +  P
Sbjct: 243 LLAFDKIGSGSGDLSKCESFLGDILYMVSKEP 274


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 77  RTLQTAITANKYNLIMLTRPRVVA 6
           R L  A+T  KY +I+L  P+V+A
Sbjct: 785 RRLNVALTRAKYGVIVLGNPKVLA 808


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 308 VASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTFLSFPDVYASLRS 150
           VAS   TSP  L+++ + PSP P    S + +T     T          SLRS
Sbjct: 549 VASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRS 601


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
 Frame = +1

Query: 259 RVEIDKFLGDVDYS-----EATNPYISLSKTFSEMNP---DFFTMANKIYVGNQYTLDEK 414
           ++E+D    + +YS        N  I L +T  E++    DF     + YV  + +L  +
Sbjct: 295 KMEVDGLNNNSNYSATPRTRVVNGQIVLDETSLEVDRHERDFVPAEEREYV-EENSLSRR 353

Query: 415 FTSSSRQYQSEVETIDFSDTKKAADIINQWANE 513
            TS++   + + E  +  DT+K    ++QW  +
Sbjct: 354 VTSATWGNRQKPEKWNAMDTEKFYKALSQWGTD 386


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +1

Query: 178 KDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPD 357
           ++ N +   +  +   L  ++   E  +  +D+   +V   E+TN   +L  T   +  D
Sbjct: 367 EENNSLKQQIEQLQRELASETVVKENLKSSLDQQSANVQKLESTNR--ALESTIKTLEED 424

Query: 358 FFTMANKI 381
            +TM NKI
Sbjct: 425 VYTMKNKI 432


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 239 DL*RSISIITPNGEDTTFLSFPDVYASLRSF 147
           D  R ++ +T  G+    LS  D  ASLRSF
Sbjct: 154 DTFREVTFLTELGQQEDLLSSRDGEASLRSF 184


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -3

Query: 115  LSCCTRGQRNRML-ARCRP 62
            LSCCT G  N +L ++C P
Sbjct: 1236 LSCCTEGSINALLNSKCLP 1254


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 76  RAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKS 240
           + FY   +E N T L  +     +      Y   KDK++   P   ++LM + KS
Sbjct: 158 KGFYISPNERNFTRLCRSASSVHISYQNGLYCIDKDKSLTKEPSVNIILMNVGKS 212


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 188 FLSFPDVYASLR-SFIEVLSMASPKAVLLYSWSKK*NARTLQTAITANK 45
           + SFP + AS+  +F+ ++ +  P  V +Y+W+       LQ +  +NK
Sbjct: 156 YSSFPLMIASIVCAFVPLIFIRIPVIVAMYAWTLFAAMGVLQNSNLSNK 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,994
Number of Sequences: 5004
Number of extensions: 46271
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)