Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M24
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 33 0.11
01_01_1152 + 9170628-9171899 33 0.11
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 30 1.4
05_07_0209 + 28420008-28421510 28 4.3
10_05_0047 + 8524345-8524414,8524687-8524776,8525004-8525306,852... 28 5.6
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 27 7.5
10_04_0013 + 7560286-7560594 27 9.9
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052... 27 9.9
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 27 9.9
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 27 9.9
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 27 9.9
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 33.5 bits (73), Expect = 0.11
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Frame = +1
Query: 175 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDV--DYSEATNPYISLSKTFSEM 348
G DKN+ SPL + + L +GA + +I FLG A +++L +
Sbjct: 29 GGDKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDS 88
Query: 349 NP------DFFTMANKIYVGNQYTLDEKFTS-SSRQYQSEVETIDFSD-TKKAADIINQW 504
P AN ++V L + + +Y++E + F D ++A IN+W
Sbjct: 89 GPGDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEW 148
Query: 505 ANEKTRGHIR 534
T G I+
Sbjct: 149 FESATAGRIK 158
>01_01_1152 + 9170628-9171899
Length = 423
Score = 33.5 bits (73), Expect = 0.11
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Frame = +1
Query: 175 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEA-TNPYISLSKTFSEMN 351
G+ +N + SPL + L GA ++ E+ FLG +E +P L +
Sbjct: 56 GQGRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLP 115
Query: 352 PDFFTMANKIYVGNQYTLDEKFT-SSSRQYQSEVETIDF-SDTKKAADIINQWANEKTRG 525
F A ++V L +F +++ +Y + E DF + ++A + +N + ++ T G
Sbjct: 116 NTSF--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEG 173
Query: 526 HIR 534
IR
Sbjct: 174 LIR 176
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Frame = +1
Query: 175 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY------ISLSKT 336
G +NV SPL + + + L +GAG +R ++ LG +E + + + L+
Sbjct: 32 GAGRNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADA 91
Query: 337 FSEMNPDFFTMANKIYVGNQYTLDEKFTS-SSRQYQSEVETIDF 465
P A+ ++V +L + F + +Y++E ++DF
Sbjct: 92 SGAGGPR-VAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDF 134
>05_07_0209 + 28420008-28421510
Length = 500
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +1
Query: 256 SRVEIDKFLGDVDYSEATN---PYISLSKTFSEMNPDFFTMANKIYVGNQYTLDEKFTSS 426
S +++ + L D D + A + P + + MNP FT+ + N+ +L E+FT+S
Sbjct: 279 SVLQLHRLLVDQDAAAAASFPAPIDGVLDWVASMNPRVFTVVEQEADHNKSSLLERFTNS 338
Query: 427 SRQYQSEVETID 462
Y S ++++
Sbjct: 339 LFYYASMFDSLE 350
>10_05_0047 +
8524345-8524414,8524687-8524776,8525004-8525306,
8525413-8525872,8525962-8526043,8526157-8526351
Length = 399
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 289 VDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNQYTLDEKFTSSSRQYQSEVETI 459
++ E N K E N D T NK+ ++ T +EK S+ R+ + + E I
Sbjct: 331 MELKEGDNSERKREKALEEYN-DEITRINKVAAASRLTAEEKRRSAERKVREKAERI 386
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.5 bits (58), Expect = 7.5
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Frame = +1
Query: 193 VSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYIS---LSKTFSEMNPDFF 363
V +G + S G S V D G++ P +S SK S D +
Sbjct: 509 VDIAVGCAEALACMHSNIGHKSVVHGDVKSGNILLGNNLEPKVSDFGSSKLMSVAKSDNW 568
Query: 364 T-MANKIYVGNQYTLDEKFTSSSRQYQSEVETIDFSDTKKA 483
+ MA+K Y+ Y +FT S Y V ++ KKA
Sbjct: 569 SVMADKSYIDPAYIKTGRFTEKSDVYSFGVVLLELITRKKA 609
>10_04_0013 + 7560286-7560594
Length = 102
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -3
Query: 313 DWWPHYNLHHPKT-CRSPHDYLHRRLIC 233
DWW Y + P SPHD R +IC
Sbjct: 64 DWWS-YGMEFPSAVAASPHDAATRDMIC 90
>07_03_1731 -
29102403-29102720,29103529-29103735,29103937-29105210,
29105298-29105734,29106370-29106764,29106921-29107051,
29109034-29109052
Length = 926
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 25 VNMIKLYLFA-VIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSS 201
+ +I+L+ A V+ +C +R F+FF T G +K+ G D N SS
Sbjct: 50 LGLIQLWGSADVLNICKMRRFFFFGSSTASTGNGGKTPSDDDSRIKKKALDGGDSNGSSS 109
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 27.1 bits (57), Expect = 9.9
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +1
Query: 304 ATNPYISLSKTFSEMNPDFFTMANKIYVGNQYTLDEKFTSSSRQYQSEVETIDFSD---- 471
A N + L + ++ FT +K+ G+ T ++ S + S T+ ++
Sbjct: 685 ANNGALLLRQFVQTLSGPAFTWYSKLAPGSIRTWEQMQDSFLEHFYSTQRTVGITELTQT 744
Query: 472 ----TKKAADIINQWANEKTRGHIRSPISD 549
+KAAD IN+W N H PI++
Sbjct: 745 EQRANEKAADFINRWRNLSL--HCPQPITE 772
>05_07_0247 +
28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 247 GEGSRVEIDKFLGDVDYSEATNPYISLSK 333
GE + + D +G+ D E TNP LSK
Sbjct: 540 GEDQKQKTDAAVGEEDKCEVTNPVTKLSK 568
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 220 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPD-FFTMANKIYVGNQ 396
L LL SGA E R K GD E ++ + M P+ F ++AN Y+ +
Sbjct: 233 LHLLSSSGAREKKRHHTSKLTGDERVRELLEGHVKNCRVAFRMEPEIFISLAN--YLRTE 290
Query: 397 YTLDE 411
+D+
Sbjct: 291 KLVDD 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,076,306
Number of Sequences: 37544
Number of extensions: 285782
Number of successful extensions: 749
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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