Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M24
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      43   1e-04
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      38   0.005
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      35   0.050
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.088
SB_42208| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)              29   1.9  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      29   2.5  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       29   2.5  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     28   4.4  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         28   4.4  
SB_49855| Best HMM Match : FBA_2 (HMM E-Value=6.2)                     28   5.8  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   27   7.6  
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 28/125 (22%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
 Frame = +1

Query: 187 NVVSSPLGVMMLMLLYKSGAGEGSRVEIDK-FLGDVDYSEATNPYI-SLSKTFSEMNPDF 360
           N+  SP  +++ + +   GA   +  ++ K F    D  E  + ++ +L+ + S+ N   
Sbjct: 29  NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQ-- 86

Query: 361 FTMANKIYVGNQYTLDEKFTSSSRQ-YQSEVETIDF-SDTKKAADIINQWANEKTRGHIR 534
             MAN+++    + + E+F  +S++ + +E+  +D+  ++  A D +N+W  +KT+  I+
Sbjct: 87  ILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIK 146

Query: 535 SPISD 549
           + I +
Sbjct: 147 NLIPE 151


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
 Frame = +1

Query: 214 MMLMLLYKSGAGEGSRVEIDKFLG--DVDYSEATNPYISLSKTF--SEMNPDFFTMANKI 381
           M L L+Y    G  + ++I    G  + ++ E    +    +    S++      + NKI
Sbjct: 3   MALGLVYLGSRGT-TAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKI 61

Query: 382 YVGNQYTLDEKFTSSSRQ-YQSEVETIDFSDTK-KAADIINQWANEKTRGHIRSPI 543
           +  +++ + E+F   +R+ Y SE+  +DF +    A   +N W +++T+G+I+  I
Sbjct: 62  WGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELI 117


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 34.7 bits (76), Expect = 0.050
 Identities = 14/58 (24%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +1

Query: 364 TMANKIYVGNQYTLDEKFTS-SSRQYQSEVETIDF-SDTKKAADIINQWANEKTRGHI 531
           ++AN +++   +++ ++FT    + Y +++  +D+ +D + A   +NQW  E+T+  I
Sbjct: 51  SIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108


>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1181

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 289 VDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNQYTLDEKFTSSSRQYQSEVETIDFS 468
           +  S AT P+I +  T    NP+FF ++    +  Q T DE +  +   + ++   I   
Sbjct: 276 IKQSNATTPFIVIQNTLEVKNPNFFEVSLSA-LNQQVTWDEHYVVADVSFGNQSVVIPRR 334

Query: 469 DTKKAADI--INQWAN 510
            +KK   +  +NQ+ N
Sbjct: 335 SSKKMEGLHDMNQYLN 350


>SB_42208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 365 LWP-IKSTSEINILWMRNSRALPVSTKARLKLLTSAIPKKQLTSLISGLM 511
           LWP IK  +   + W  N  +LP+       +L S   K  L  L+S +M
Sbjct: 17  LWPAIKDVTHAMVTWTTNGTSLPLRMTNTYDILLSLCQKVGLVRLVSAVM 66


>SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)
          Length = 361

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 265 EIDKFLGDVDYSEATNPYISLSKTFS 342
           ++D F GD+  +EA+NP+I+  K  S
Sbjct: 216 DMDSFTGDIPETEASNPFIAPQKVVS 241


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 292 DYSEATNPYISLSKTFSEMNPDFFTMANKIYV--GNQYTLDEKFTSSSRQY 438
           +YS  +  Y++LSK +S ++ ++ T++        N  TL + + + S+ Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 292 DYSEATNPYISLSKTFSEMNPDFFTMANKIYV--GNQYTLDEKFTSSSRQY 438
           +YS  +  Y++LSK +S ++ ++ T++        N  TL + + + S+ Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +1

Query: 292 DYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNQYTLDEKFTSSSRQY 438
           +YS  +  Y++LSK +S ++ ++ T++      N  TL + + + S+ Y
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLSK-----NYSTLSKNYLTLSKNY 155


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 528  MSSGLLISPLINDVSCFFGIAEVNSFNLALVL 433
            +  G++ S LIND  C+F    VN +NLA+++
Sbjct: 1803 LGQGIVESVLINDFGCYF---TVNRYNLAMMV 1831


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 349 NPDFFTMANKIYVGNQYTLDEKFTSSSRQYQSEV-ETIDFSDTKKAADIINQWANEKTRG 525
           +PD         + ++ T D +      + +SEV E  DFS  K   D + +  +EK R 
Sbjct: 102 DPDVMERILTERIHDKLTSDSELEPLLNELKSEVAEDYDFSVRKAIVDYVLKDPSEKNRL 161

Query: 526 HIRS 537
           HI+S
Sbjct: 162 HIKS 165


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 362  LLWPIKSTSEINILWMRNSRALPV--STKARLKLLTSAIPKKQLTSLISGLMRRPEDI 529
            L+WP   + E +I+  + +R  P+  ST  RLK++ + +  +   + +  L  +PE+I
Sbjct: 1302 LVWPTPQSPEFSIVAAK-ARVAPLRQSTIPRLKMMAALVAFRLAKTTVPELKTKPENI 1358


>SB_49855| Best HMM Match : FBA_2 (HMM E-Value=6.2)
          Length = 167

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
 Frame = +1

Query: 286 DVDYSEATNPYISL-----SKTFSEMNPDFFTMANKIYVGNQYTLDEKFTSSSRQYQSEV 450
           DV+Y EA   Y+       ++    +      +A+ +Y G QY  D  F   S  +   +
Sbjct: 65  DVNYFEALKMYVMYLLNEENRNELSLKDRAKLLAHLVYFGEQYRYDSNFNDKS-YFMQRI 123

Query: 451 ETIDFSDTKKAADIINQWAN 510
           E  D     K   I N + N
Sbjct: 124 ELYDIKGDIKKEIIKNNYYN 143


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 49   FAVIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTS 174
            + +  V  ++  + F+H Y+R  +  AI K S  L+KE  TS
Sbjct: 1218 YGISNVLPLKKAFTFNHTYSRHGIFKAILKGSGNLIKEEVTS 1259


>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +1

Query: 109 RTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYK--SGAGEGSRVEIDKFL 282
           R    D +D   ++  K  +     ++      G++ + +L    S +    R+E+ K L
Sbjct: 529 RMRFSDTVDIVDVEEAKRLHREALKQSATDPKTGLIDISILTTGLSASDRKRRLELAKSL 588

Query: 283 GDVDYSEATNPYISLSKTFSEM 348
             +  S+   P +   KTFSEM
Sbjct: 589 KALLTSKGKVPTVDYQKTFSEM 610


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 338 KVLLRLMY-GLVASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGE 198
           K+  R +Y  +V  L   S ++L+I  R PSP+PD  R  S  +P+ +
Sbjct: 271 KLKTRFLYLKVVIKLEGGSDEDLAILDRSPSPSPDRRRQRSQSSPHSD 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,248,218
Number of Sequences: 59808
Number of extensions: 328625
Number of successful extensions: 868
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)