Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M24
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 395 NILWMRNSRALPVSTKARL 451
           +I+W R++R LP++ K ++
Sbjct: 521 SIVWERDTRVLPINRKQKV 539


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 265 PHDYLHRRLICREALASSRLMVKTQHSCPSQMY 167
           P D + RR++ +   A S ++ K+   C + +Y
Sbjct: 232 PFDTVRRRMMMQSGRAKSEILYKSTLHCWATIY 264


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 265 PHDYLHRRLICREALASSRLMVKTQHSCPSQMY 167
           P D + RR++ +   A S ++ K+   C + +Y
Sbjct: 232 PFDTVRRRMMMQSGRAKSEILYKSTLHCWATIY 264


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 167  YASLRSFIEVLSMASPKAVLLYSWSKK*NARTLQTAITANKYN 39
            +  LRS +E+L ++  + V    W    NAR ++ ++ +N ++
Sbjct: 886  FLPLRS-LEILRLSGNRLVTFPVWQVTLNARLVELSLGSNPWS 927


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 355  DFFTMANK-IYVGNQYTLDEKFTSS 426
            D  T  NK +Y  N Y +DE  +SS
Sbjct: 933  DVSTPVNKKVYKQNDYIVDESSSSS 957



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +1

Query: 349 NPDFFTMANKIYVGNQYTLDEKFTSSSRQYQSEVETIDFSDTKKAADI 492
           NPD F ++          + E+    ++  Q E+ T+     ++ +DI
Sbjct: 417 NPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDI 464


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/48 (20%), Positives = 21/48 (43%)
 Frame = +1

Query: 349 NPDFFTMANKIYVGNQYTLDEKFTSSSRQYQSEVETIDFSDTKKAADI 492
           NPD F ++          + E+    ++  Q E+ T+     ++ +DI
Sbjct: 123 NPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDI 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,765
Number of Sequences: 438
Number of extensions: 3102
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)