Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M24
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi... 38 0.003
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi... 33 0.095
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.51
At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R... 29 2.7
At1g76740.1 68414.m08931 expressed protein weak similarity to fi... 29 2.7
At4g36160.1 68417.m05146 no apical meristem (NAM) family protein... 28 3.6
At1g70900.1 68414.m08181 expressed protein 28 3.6
At5g39785.2 68418.m04819 expressed protein 28 4.7
At5g39785.1 68418.m04818 expressed protein 28 4.7
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 28 4.7
At4g04010.1 68417.m00571 Ulp1 protease family protein contains P... 28 4.7
At5g26970.1 68418.m03218 hypothetical protein 27 6.2
At1g23110.1 68414.m02889 hypothetical protein 27 6.2
At5g28970.1 68418.m03584 Ulp1 protease family protein contains P... 27 8.3
At4g13330.1 68417.m02083 expressed protein 27 8.3
At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to... 27 8.3
At3g25140.1 68416.m03139 glycosyl transferase family 8 protein c... 27 8.3
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 8.3
>At2g26390.1 68415.m03167 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 389
Score = 38.3 bits (85), Expect = 0.003
Identities = 31/144 (21%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Frame = +1
Query: 124 DAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSE 303
+ + + + K+++ +G NVV SP+ + +L+ L +G+ ++ EI FL
Sbjct: 12 NVVARLAKKVIETDVANGS--NVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDH 69
Query: 304 ATNPYISLSKTFSEMNPDFFTMANKIYVGNQYTLDEKFTS-SSRQYQSEVETIDFSDTK- 477
++ +E + + A+ +++ L F Y++ +DF+ TK
Sbjct: 70 LNAVLAKIADGGTERSDLCLSTAHGVWIDKSSYLKPSFKELLENSYKASCSQVDFA-TKP 128
Query: 478 -KAADIINQWANEKTRGHIRSPIS 546
+ D +N WA+ T G I+ +S
Sbjct: 129 VEVIDEVNIWADVHTNGLIKQILS 152
>At3g45220.1 68416.m04880 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 393
Score = 33.5 bits (73), Expect = 0.095
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Frame = +1
Query: 169 TSGKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKF--LGDVDYSEAT-NPYISLSKTF 339
T N+V SP+ + +L+ L +G+ ++ +I F L DY A +S++
Sbjct: 24 TVANGSNLVFSPMSINVLLCLIAAGSNCVTKEQILSFIMLPSSDYLNAVLAKTVSVALND 83
Query: 340 SEMNPDF-FTMANKIYVGNQYTLDEKFTSS-SRQYQSEVETIDFSDTKKAADI--INQWA 507
D + A +++ + F Y + +DF+ TK A I +N WA
Sbjct: 84 GMERSDLHLSTAYGVWIDKSLSFKPSFKDLLENSYNATCNQVDFA-TKPAEVINEVNAWA 142
Query: 508 NEKTRGHIRSPISD 549
T G I+ +SD
Sbjct: 143 EVHTNGLIKEILSD 156
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 271 DKFLGDVDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGN 393
D++L Y + T P I KT S P+ N++Y+GN
Sbjct: 228 DRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGN 268
>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
(RPN1) contains an APC-complex (cyclosome) and
proteasome component repeat ( PS50248)
Length = 891
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 510 ISPLINDVSCFFGIAEVNSFNLALVLTGRAREFLIQSILISDVD 379
+SP++ND + S +L ++ G E + QSI+ + +D
Sbjct: 506 LSPILNDAKAPLDVIAFASLSLGMIYVGSCNEEVAQSIIFALMD 549
>At1g76740.1 68414.m08931 expressed protein weak similarity to
fimbriae-associated protein Fap1 (GI:3929312)
[Streptococcus parasanguinis]; weak similarity to 1MDa_1
protein (GI:24620455) [Caenorhabditis elegans]
Length = 1532
Score = 28.7 bits (61), Expect = 2.7
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = +1
Query: 223 MLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY-ISLSKTFSEMNPDFFTMANKIYVGNQY 399
+LL SG G E G D EA P I+ K S + PD T+ N + N+
Sbjct: 1383 LLLNSSGGGSNVSGETSILAGTADEDEAAGPIAIAFVKAMS-LTPDELTVKNHM---NEK 1438
Query: 400 TLDEKFTSSSRQYQSEVETIDFSDTKKAADIINQWA 507
DE+ + E + S+ +K I++ A
Sbjct: 1439 AADEEMITRETTPIPEETINESSENRKEYSSIDESA 1474
>At4g36160.1 68417.m05146 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) [Arabidopsis thaliana];
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 377
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +1
Query: 82 FYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVV--SSPLGVMMLMLLYKSGAGEG 255
+YFF H+ + G ++ +M +A +G+DK V S +G+ ++ YK A G
Sbjct: 69 WYFFSHKDKKYPTGTRTNRATMAGFWKA--TGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 126
Query: 256 SRVE 267
+ +
Sbjct: 127 QKTD 130
>At1g70900.1 68414.m08181 expressed protein
Length = 244
Score = 28.3 bits (60), Expect = 3.6
Identities = 25/103 (24%), Positives = 42/103 (40%)
Frame = +1
Query: 184 KNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFF 363
K +S +GV + LY S SR + K+L DY+ I L++ E NP F
Sbjct: 103 KVYANSLIGVGIASSLYHS-----SRGKFRKYLRWADYTMIATATICLTRALREENPKFL 157
Query: 364 TMANKIYVGNQYTLDEKFTSSSRQYQSEVETIDFSDTKKAADI 492
A+ + + Q + + + ++ D K A D+
Sbjct: 158 MAASALALPFQPLVVSAVHTGMMEVAFAKRALEDPDLKMAHDV 200
>At5g39785.2 68418.m04819 expressed protein
Length = 607
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +1
Query: 274 KFLGDVDYSEATNPYISLSKTFSEMNPDFFT-----MANKIYVGNQYTLDEKFTSSSRQY 438
+FL + D+ E+ + ++ S+TF+ + D F + G D + S +
Sbjct: 135 RFLTEEDFLESDSDFVDSSQTFTSNDEDGFLSDSDFAETSLKKGQNRKSDNSGSGSDSEE 194
Query: 439 QSEVETIDFSDTKKAADIINQ 501
+ E +T F + D+I Q
Sbjct: 195 EEEEDTNGFESLWEHQDLIEQ 215
>At5g39785.1 68418.m04818 expressed protein
Length = 606
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +1
Query: 274 KFLGDVDYSEATNPYISLSKTFSEMNPDFFT-----MANKIYVGNQYTLDEKFTSSSRQY 438
+FL + D+ E+ + ++ S+TF+ + D F + G D + S +
Sbjct: 135 RFLTEEDFLESDSDFVDSSQTFTSNDEDGFLSDSDFAETSLKKGQNRKSDNSGSGSDSEE 194
Query: 439 QSEVETIDFSDTKKAADIINQ 501
+ E +T F + D+I Q
Sbjct: 195 EEEEDTNGFESLWEHQDLIEQ 215
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
putative contains Pfam domain PF01851:
Proteasome/cyclosome repeat
Length = 1103
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -1
Query: 510 ISPLINDVSCFFGIAEVNSFNLALVLTGRAREFLIQSILISDVD 379
+SP++ND + + + +L ++ G E + QSI+ + +D
Sbjct: 549 LSPILNDANAPLDVIAFAALSLGMIYVGSCNEEVAQSIIFALMD 592
>At4g04010.1 68417.m00571 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At2g06430,
At2g15140, At2g04980, At2g14130, At3g44500, At2g15190,
At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
Length = 836
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +1
Query: 319 ISLSKTFSEMNPDFFTMANKIYVGNQY--TLDE---KFTSSSRQYQSE 447
+ L KT E NP+ F + ++VG+ + +DE +F + +QSE
Sbjct: 646 LELMKTRKESNPELFKNKSVVFVGSSFLNVIDESDMEFLDNKEGFQSE 693
>At5g26970.1 68418.m03218 hypothetical protein
Length = 108
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 369 GQ*NLRRKSIYFG*EIHELFPSV 437
G N++RKS++F +I +LFP++
Sbjct: 78 GNVNMQRKSLFFPTQISDLFPAI 100
>At1g23110.1 68414.m02889 hypothetical protein
Length = 261
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 184 KNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFF 363
K +S +GV + LY + SR ++ K+L VDY+ I LS+ NP F
Sbjct: 120 KVYANSLIGVGIASSLYHA-----SRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFL 174
Query: 364 TMANKI 381
A+ +
Sbjct: 175 MAASAL 180
>At5g28970.1 68418.m03584 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1172
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 322 SLSKTFSEMNPDFFTMANKIYVGNQYTLDEKFTSSS 429
SL +T E+N D +M +Y+ NQ TL+ +S S
Sbjct: 625 SLLETQPEVNIDSDSMKLHVYINNQVTLEMSASSHS 660
>At4g13330.1 68417.m02083 expressed protein
Length = 428
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 136 YQWRHLRLSCCTRGQRNRMLARCR 65
YQWR LR + TR +++A CR
Sbjct: 114 YQWRSLRFNDDTRQSTVKVMAACR 137
>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to gi:
3172025; identical to cDNA putative aldehyde oxidase
(AO3) mRNA, partial cds GI:2792303
Length = 1321
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 220 LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMN 351
L L YK GAGE + V S +S+ + F+E N
Sbjct: 942 LALFYKDGAGEPHEYTLSSMWDKVGVSSKFEERVSVVREFNESN 985
>At3g25140.1 68416.m03139 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 559
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = +1
Query: 187 NVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFFT 366
+VV+ + + + +++K +G+ VE+ DY+ + Y+ + K N F
Sbjct: 281 HVVTDKMNLGAMQVMFKLKEYKGAHVEVKAV---EDYTFLNSSYVPVLKQLESANLQKFY 337
Query: 367 MANKIYVGNQYTLDEKF 417
NK+ + T + KF
Sbjct: 338 FENKLENATKDTTNMKF 354
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 305 ASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTF 186
+SL +SP LS+S P P P +S ++P+ +T+
Sbjct: 100 SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSSSSSTY 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.131 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,498,018
Number of Sequences: 28952
Number of extensions: 236623
Number of successful extensions: 657
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -