Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M22
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   2.8  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   4.8  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    24   8.5  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    24   8.5  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 86  NLAATQKAVDPIQQLFLDKIREYKQKSSGGKLVDPSPAIQKRVESRAGKA 235
           N  +TQK     Q     K++E K      KL       QK++E +AGKA
Sbjct: 395 NNPSTQKTEKVSQSKKGAKVKEEKGLKKDRKLPKKMRKAQKKLERKAGKA 444


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 LPELT*PHFPLSSLKSPNWTPSMSKHHN 339
           LP +T     LS L   NW  ++ KHH+
Sbjct: 342 LPFITIHKNDLSDLSGENWIENILKHHD 369


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 23/93 (24%), Positives = 40/93 (43%)
 Frame = +2

Query: 59  MRASVIVTRNLAATQKAVDPIQQLFLDKIREYKQKSSGGKLVDPSPAIQKRVESRAGKAR 238
           MR S+ +   L+ + KA  P++     K R   ++   GK+V  SP +   VES  G   
Sbjct: 518 MRKSLELKLKLSQSNKA-GPVKHR---KRRPKSKRRITGKVVFDSPNVASGVESDEGSEE 573

Query: 239 ETVXXXXXXXXXXXXXFQV*RAQTGPHR*ASTT 337
            ++             F+  +  T P R +S++
Sbjct: 574 ISLDSEYSDILSDDGDFEKEKQATLPRRRSSSS 606


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 396 NKIIYYINLVPYISMVT 346
           +K + Y+NL+PYI+ +T
Sbjct: 603 DKDLLYLNLLPYINSIT 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,368
Number of Sequences: 5004
Number of extensions: 21117
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)