Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M22
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0517 + 29981537-29981927,29982024-29982231,29982373-299825...    30   0.88 
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772...    28   3.6  
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611...    27   6.2  
01_06_1543 - 38138253-38138855,38139000-38139239                       27   6.2  

>01_06_0517 +
           29981537-29981927,29982024-29982231,29982373-29982544,
           29984468-29984533,29984658-29984771,29984880-29984996,
           29985097-29985223,29985317-29985603,29985701-29985891,
           29985981-29986063,29986175-29986251,29986729-29986896
          Length = 666

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = -1

Query: 225 ARLSTLFWIAGLGSTSLPPELFCLYSLILSKNNC*IGSTAFCVAAKFLVTITEARIA 55
           ARL+ L  I GL S+ +PP    +Y++  S NN  +G+ A   A+  L +I E  +A
Sbjct: 119 ARLANLPPIIGLYSSFVPP---LMYAVFGSSNNLAVGTVA--AASLLLASIIETEVA 170


>03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,
            7724751-7725072,7725183-7725661,7726157-7726430,
            7726598-7726884,7726966-7727388,7727545-7727890,
            7728011-7728328,7729817-7731081
          Length = 1803

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 252  RRTVSRAFPARLSTLFWIAGLGSTSLPPELFCLYSLILSKNNC*IGSTAFCVA 94
            RR ++   P  +STL  I+GLG +S    L   + L+    +C  GS+   VA
Sbjct: 1734 RRELAARAPLVVSTLQAISGLGDSSFEKNLGQFFPLLAGLISCEHGSSEVQVA 1786


>03_02_0961 +
           12759701-12760054,12760294-12760420,12760719-12761167,
           12761369-12761590,12761672-12761980,12762092-12762430,
           12762504-12762584,12762661-12762756,12762846-12763220,
           12763400-12763531,12763962-12764132
          Length = 884

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 291 KFEEPKLDPIDEQAPQPKK*PLI 359
           +FE+ KLD ++E+ P+P+K  L+
Sbjct: 708 EFEKDKLDVLNEENPEPEKPALV 730


>01_06_1543 - 38138253-38138855,38139000-38139239
          Length = 280

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 137 DKIREYKQKSSGGKLVDPSP 196
           D +++Y++K+  GK+  PSP
Sbjct: 209 DDVKQYEEKAPNGKMAHPSP 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,036,989
Number of Sequences: 37544
Number of extensions: 141229
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)