Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M22
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)           56   2e-08
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)                    27   4.8  

>SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)
          Length = 175

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 26/70 (37%), Positives = 40/70 (57%)
 Frame = +2

Query: 32  TPSLVSLRAMRASVIVTRNLAATQKAVDPIQQLFLDKIREYKQKSSGGKLVDPSPAIQKR 211
           +PS  S+   R        +A   K  DPIQ+LF++K+  YKQKS GGKL+D +P ++  
Sbjct: 87  SPSTCSIVLRRNIGTTYAAMAKMDKNADPIQRLFVEKLEAYKQKSKGGKLIDSTPEMESE 146

Query: 212 VESRAGKARE 241
           +E    + R+
Sbjct: 147 IEKEREQIRK 156


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 26   MLTPSLVSLR-AMRASVIVTRNLAATQKAVDPIQQLFLDKI 145
            M +PSL   R  M+  +  T    +TQKA++P+Q + L K+
Sbjct: 1199 MYSPSLGHTRNTMKELISTTTTSDSTQKAINPLQIINLTKL 1239


>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
          Length = 834

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 38  SLVSLRAMRASVIVTRNLAATQKAVDPIQQLFLDKIREYKQKSSGGKLVDPSPAIQ 205
           SLVS   ++A  IV   L   +KA D   +L   + ++ K    GG  VDP+  ++
Sbjct: 351 SLVSWGKIKALDIVDGPLPLRRKASDSKYELGASQPKKVKLSVKGGAAVDPASEME 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,481
Number of Sequences: 59808
Number of extensions: 152683
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)