Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M22
         (423 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    25   1.5  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    24   2.6  

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
            protein.
          Length = 988

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 157  FVLSNFVQE*LLN-RVDCFLCGR*VSCYYHRSAHCPQANQRRSK 29
            F+ S FV++ +L    +C  CG  V    H   HCP++++ R++
Sbjct: 921  FLRSYFVEKGILEGSPNCPECGDAVEDVEHVLFHCPRSDRIRNE 964


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 113 DPIQQLFLDKIREYKQKSSGGKLVDPSPAIQKRVESRAGKARETV 247
           DP  Q F  ++   +   +GG L +   + Q   ES +GK ++ +
Sbjct: 292 DPELQSFGKQVVRIRSTKNGGLLFELKKSDQTECESFSGKIQQAI 336


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 348,948
Number of Sequences: 2352
Number of extensions: 4640
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 35060166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)