Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M22
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033510-3|CAA22066.1|  323|Caenorhabditis elegans Hypothetical ...    29   1.0  
AF016452-6|AAB66018.1|  129|Caenorhabditis elegans Hypothetical ...    29   1.0  
Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical p...    28   3.2  
Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z81595-1|CAB04753.2|  337|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine rece...    27   7.3  

>AL033510-3|CAA22066.1|  323|Caenorhabditis elegans Hypothetical
           protein Y40H7A.5 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 423 IEFFFFFLSNKIIYYINLVPYISMV-TS*VVVLAHRW 316
           +EF    L+ +I+Y+ ++V Y+ +V T+ +VV+A+ W
Sbjct: 167 LEFPEMQLTGRIVYWSSIVVYVQLVFTALLVVIAYTW 203


>AF016452-6|AAB66018.1|  129|Caenorhabditis elegans Hypothetical
           protein T05H4.12 protein.
          Length = 129

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 59  MRASVIVTRNLAATQKA-VDPIQQLFLDKIREYKQKSSGGKLVDPSPAIQKRVESRAGK 232
           M  +V   R+L+ T     D IQQ F+ KIRE  +  + G L +  PA++K ++    +
Sbjct: 1   MFRAVQSVRSLSTTAACRQDLIQQTFVTKIREIAK--NAGNLANSDPAVKKALQEELNR 57


>Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical
           protein Y57G11C.18 protein.
          Length = 677

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 264 LRELRRTVSRAFPARLSTLFWIAGLGSTSLPPELFCLYSL 145
           LR++    S  F   +  +FW  GL + S+P  L   +++
Sbjct: 192 LRKILENCSETFEKPIDNIFWFYGLDTPSIPRHLHNFHAI 231


>Z69646-8|CAA93477.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 270 MTAFPA-FKFEEPKLDPIDEQAPQP 341
           M++ P   +  +P+ DP+D++ PQP
Sbjct: 649 MSSVPGGLRLRQPEFDPVDDKVPQP 673


>Z50794-7|CAA90661.3|  896|Caenorhabditis elegans Hypothetical
           protein F59F5.7 protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 270 MTAFPA-FKFEEPKLDPIDEQAPQP 341
           M++ P   +  +P+ DP+D++ PQP
Sbjct: 649 MSSVPGGLRLRQPEFDPVDDKVPQP 673


>AF067214-6|AAC17005.2|  457|Caenorhabditis elegans Hypothetical
           protein F56C3.2 protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 55  GNARFCDSNKKLSGHTKSSRPDSAII 132
           GN   CD +K + GH K  +   A+I
Sbjct: 57  GNLELCDESKDVGGHPKKLQDSPALI 82


>Z81595-1|CAB04753.2|  337|Caenorhabditis elegans Hypothetical
           protein T22H2.1 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 115 VDCFLCGR*VSCYYHRSAHCPQANQRRSKHLFLDVLLV 2
           V CF     ++C+ +R     Q NQ  S  L+LD  L+
Sbjct: 101 VFCFELAAGLTCFVYRHNAAAQINQTYSSKLYLDKFLL 138


>U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein118 protein.
          Length = 378

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 279 MRSCQLRELRRTVSRAFPARLSTLFWIAGLGSTSLPPELFCLYSLILSKN 130
           +R+  +R    T   +     ++LF IAG+ +TSLP  +F  + +   K+
Sbjct: 138 IRTLMIRNPMSTTYESLGNPKASLFVIAGICTTSLPISMFKFFEVQFEKS 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,736,724
Number of Sequences: 27780
Number of extensions: 119993
Number of successful extensions: 363
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)