Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M22
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   10.0 

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -1

Query: 420 EFFFFFLSNKIIYYINLVPYISMVT----S*VVVLAHRWGPVWALQT*KREMRSCQLREL 253
           E F    + + +  + L   +S+V     S +V    +W  V+ LQ  +++    + R  
Sbjct: 194 ESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYILQNLQKKRTRAEGRLS 253

Query: 252 RRTVSRAFPARLSTLF 205
              +S+  P R +TLF
Sbjct: 254 SDNMSKKSPVRKATLF 269


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 112 DCFLCGR*VSCYYHRSAH 59
           +C  C R  SCYY    H
Sbjct: 7   ECPYCRRNFSCYYSLKRH 24


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 96   PHKKQSTRFSNYSWTKLESTNRKALVVNSSILAQR 200
            PH++Q  +        L S+N   L+   ++LAQ+
Sbjct: 1102 PHQQQQQQQQKILAKVLTSSNSGQLISVENLLAQK 1136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,673
Number of Sequences: 438
Number of extensions: 1478
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)