Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M22
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13190.1 68418.m01510 expressed protein                             27   5.2  
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi...    27   6.9  

>At5g13190.1 68418.m01510 expressed protein
          Length = 134

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 109 CFLCGR*VSCYYHRSAHCPQANQR 38
           CFLC   + C +++  HCPQ   +
Sbjct: 85  CFLCPS-MDCLWNKQHHCPQCGNK 107


>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase from [Solanum
           tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
           [Hordeum vulgare] GI:21314275, [Oryza sativa]
           GI:3252794; contains Pfam profiles PF00128: Alpha
           amylase catalytic domain, PF02922: Isoamylase N-terminal
           domain
          Length = 783

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 99  HKKQSTRFSNYSWTKLESTNRKALVVNSSILAQRSR 206
           H K +T FSN+++ K+ + N K L    SI A+  R
Sbjct: 13  HTKLNTLFSNHTFPKISAPNFKPLFRPISISAKDRR 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,280,138
Number of Sequences: 28952
Number of extensions: 111196
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)