Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M21
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...   109   2e-25
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   1.3  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    27   1.8  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   3.1  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    26   4.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.5  

>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  109 bits (263), Expect = 2e-25
 Identities = 52/119 (43%), Positives = 73/119 (61%)
 Frame = +3

Query: 183 MLVLVLGDLHIPHRCSSXXXXXXXXXXXGRIQHILCTGNLCTKESYEYLKTLASDVHVVR 362
           MLVLV+GD HIP R              G+I  I+C GNL +   YEYLK + SD+ +V+
Sbjct: 1   MLVLVIGDFHIPDRAPKLSEKFRQLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVK 60

Query: 363 GDFDENTTYPEQKVITVGQFRIGLIHGHQVVPWGDEESLALVQRQLDVDILISGHTHRF 539
           G FD ++  P    IT+G F+IG  +GH VVP    E+L+++ R++D DIL+ G TH+F
Sbjct: 61  GAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKF 119


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 420 FRIGLIHGHQVVPWGDEESLALVQRQLDVDILISGHTH 533
           F IG   GH ++  G   SL L ++Q   + LIS + H
Sbjct: 250 FVIGAYSGHHLLGQGQASSLNLAEQQAAYNSLISYYIH 287


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -3

Query: 510 YQHRAASAPVP-GTPRHPRAQPDDHE*GQYETAQLLSPFAQG 388
           Y+   A   VP G P HP  +    + G+Y    L +P A G
Sbjct: 296 YRMSIAEMVVPYGNPEHPHQRKHAFDLGEYGAGYLTNPLALG 337


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 61  LCIYNYDKIYKCDKLR*E*YYSLRAKNWLIINSYY-LYCIPKCWSSYLAIY 210
           L I +   +Y  D L  + Y S +   W + + +  +Y IPK WS    IY
Sbjct: 361 LVISSNSILYPKDSLD-QIYDSTKTLTWALASQWIGVYLIPKAWSDLWLIY 410


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
 Frame = +1

Query: 118 YYSLRAKNWLIINSYYLYCIPKC---WS---SYLAIYISLIDAVVYL 240
           +Y +  K W+++    L  I      WS   ++LA+  +++DAVVY+
Sbjct: 171 FYQISKKAWILLKECKLPTIDSTGIHWSPDGNWLAVLENVLDAVVYI 217


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +1

Query: 163  YLYCIPKCWSSYLAIYISLIDAVVYLQSLRSYYCQAGSSTYFALEI 300
            Y++ + K W SY    +S +    YL+   S+ C+     +  +E+
Sbjct: 3268 YIFKLRK-WRSYFERLLSKVPKKQYLEQYSSFLCEFHHQKFDEIEV 3312


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 503 IELPLHQCQGLLVTPGHNLMTMNEANTKLPNCYHLLLRVCCILIKVTSDHMNIT 342
           + LP++QC  L V P ++ M ++  N   P     L  + C+ +       +IT
Sbjct: 494 LALPVYQCPRLAVDPIYH-MDVSNCNPSKPTWSRKLRLLQCVFVPFAFVTFSIT 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,516
Number of Sequences: 5004
Number of extensions: 48973
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)