Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M21
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0364 - 9457747-9458043,9459815-9459952,9460072-9460141,946... 129 8e-41
05_06_0114 + 25710544-25710780,25710879-25711592 29 2.4
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 29 2.4
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 28 4.1
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 28 4.1
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 28 5.5
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 5.5
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 27 7.2
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 27 7.2
>02_02_0364 -
9457747-9458043,9459815-9459952,9460072-9460141,
9460928-9460995,9462451-9462582
Length = 234
Score = 129 bits (311), Expect(2) = 8e-41
Identities = 54/89 (60%), Positives = 72/89 (80%), Gaps = 4/89 (4%)
Frame = +3
Query: 285 LCTGNLC----TKESYEYLKTLASDVHVVRGDFDENTTYPEQKVITVGQFRIGLIHGHQV 452
LC G C TKE ++YLK+L D+H+ RG++DE+ YPE K +T+GQF++GL HGHQV
Sbjct: 78 LCIGLTCYQDDTKEVHDYLKSLCPDLHITRGEYDEDARYPETKTLTIGQFKLGLCHGHQV 137
Query: 453 VPWGDEESLALVQRQLDVDILISGHTHRF 539
VPWGD +SLA++QRQLDVDIL++GHTH+F
Sbjct: 138 VPWGDLDSLAMLQRQLDVDILVTGHTHQF 166
Score = 55.6 bits (128), Expect(2) = 8e-41
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +3
Query: 183 MLVLVLGDLHIPHRCSSXXXXXXXXXXXGRIQHILCTGNLCTK 311
+LVL LGDLH+PHR + G+IQHI+CTGNLC K
Sbjct: 2 VLVLALGDLHVPHRAADLPAKFKSMLVPGKIQHIICTGNLCIK 44
>05_06_0114 + 25710544-25710780,25710879-25711592
Length = 316
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 395 AKGDNSWAVSYWPHSWSSGCA 457
A G + W +SY+P+ +SGCA
Sbjct: 43 AIGGHQWRISYYPNGKNSGCA 63
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 513 GYQHRAASAPVPGTPRHPRAQP 448
G++HRA + PVP PRA P
Sbjct: 1004 GHRHRAVAVPVPHAEATPRAMP 1025
>04_04_1358 + 32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 363 GDFDENTTYPEQKVITVGQFRIGLIHGHQVVPWGD 467
GDF++ T Y +QK + + + +GL H + +GD
Sbjct: 973 GDFNQATIY-QQKALDINERELGLDHPETMKSYGD 1006
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 178 ECNINNSCL*STNSLHAKNNITPTGVYRIYRFYRNCKYINKNIS*TTTSLVP 23
E NI ++ + S + + + P GV+R Y + + NI TT +P
Sbjct: 232 EINITSTIMSSMGDYYQRATLDPDGVFRQYVYPKEAARKWNNIGWTTVDFIP 283
>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 363 GDFDENTTYPEQKVITVGQFRIGLIHGHQVVPWGD 467
GDF++ T Y +QK + + + +GL H + +GD
Sbjct: 934 GDFNQATIY-QQKALDINERELGLDHPDTMKSYGD 967
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 363 GDFDENTTYPEQKVITVGQFRIGLIHGHQVVPWGD 467
GDF++ T Y +QK + + + +GL H + +GD
Sbjct: 937 GDFNQATIY-QQKALDINERELGLDHPDTMKSYGD 970
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 163 YLYCIPKCWSSYLAIYISLIDAVVYLQSLRSYYCQAGSSTYFALEICA 306
+ YC + S +A+ I L++ ++Y ++RSY ++ +CA
Sbjct: 404 FFYCNSVSFMSSIALIILLVNPILYRPAIRSYALSVCTAVGMFALMCA 451
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 417 QFRIGLIHGHQVVPWGDEESLALVQRQLDVDILIS 521
Q +GL V+PW + + A+ R LD+D +S
Sbjct: 1260 QNHVGLSGSAAVLPWVPDTTAAIALRMLDLDSAVS 1294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,302
Number of Sequences: 37544
Number of extensions: 308904
Number of successful extensions: 812
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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