Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M21
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_57104| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_49867| Best HMM Match : Keratin (HMM E-Value=8.9)                   28   4.2  
SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_22865| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_43589| Best HMM Match : Rpr2 (HMM E-Value=1.9)                      27   9.8  
SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)           27   9.8  
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 187 NILECNINNSCL*STNSLHAKNNITPTGVYRIYRFYRNCKYINKNIS*TTTSL 29
           NI   N NN+ + + N+ ++KNNI     Y+ +  Y+N   IN  I  T  S+
Sbjct: 29  NITNNNNNNNIIINNNNDNSKNNIKKHKAYQKHGHYQNNININSEIKDTKDSI 81


>SB_57104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 106 GVYRIYRFYRNCKYINKN 53
           G++  Y +Y NCKY N+N
Sbjct: 102 GMHENYEYYTNCKYRNRN 119


>SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 106 GVYRIYRFYRNCKYINKN 53
           G++  Y +Y NCKY N+N
Sbjct: 3   GMHENYEYYTNCKYRNRN 20


>SB_49867| Best HMM Match : Keratin (HMM E-Value=8.9)
          Length = 166

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 106 GVYRIYRFYRNCKYINKN 53
           G++  Y +Y NCKY N+N
Sbjct: 102 GMHENYEYYTNCKYRNRN 119


>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 468 EESLALVQRQLDVDILISGHTH 533
           + +L  +Q+  D+D+++SGHTH
Sbjct: 244 QAALQAIQQYPDIDLVLSGHTH 265


>SB_22865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 303 CTKESYEYLKTLASDVHVVRGDFDENTTYPEQKVITVGQFRIGLIHGHQVVP 458
           C K ++  LKT++S       D  +++ Y  + ++T   + IG +  H   P
Sbjct: 144 CHKHTWRQLKTVSSQSRGQTQDCCQDSPYERRALLTFAPWAIGHVRRHDEGP 195


>SB_43589| Best HMM Match : Rpr2 (HMM E-Value=1.9)
          Length = 239

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 489 APVPGTPRHPRAQPD 445
           AP+PGTP H +  PD
Sbjct: 26  APLPGTPSHAQGDPD 40


>SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)
          Length = 626

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 165 IIAVYNQPILCTQRIILLLPEFIAFIDFIVIVNT*IKIYL 46
           II    Q ILC  R+I+ L + I  +   V+  T + +YL
Sbjct: 142 IIVCLTQVILCPTRLIVCLTQLIVCLTQFVVCLTQLIVYL 181


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 276 QHILCTGNLCTKESYEYLKTLASDVHVVRGDFDENTTYPEQKV 404
           QH+ C   L     Y +   + S   +V+  +D  +T PE+ V
Sbjct: 21  QHVFCAYGLYCYTPYPWELQIKSSTFIVQPLYDRTSTEPERSV 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,868,189
Number of Sequences: 59808
Number of extensions: 371016
Number of successful extensions: 952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)