Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M21
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47357-6|CAA87426.2|  187|Caenorhabditis elegans Hypothetical pr...   160   7e-40
Z47357-7|CAD90185.1|  191|Caenorhabditis elegans Hypothetical pr...   158   3e-39
Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical pr...    28   4.9  
L16559-5|AAA27932.2|  365|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z47357-6|CAA87426.2|  187|Caenorhabditis elegans Hypothetical
           protein ZK1128.8a protein.
          Length = 187

 Score =  160 bits (388), Expect = 7e-40
 Identities = 65/118 (55%), Positives = 95/118 (80%), Gaps = 1/118 (0%)
 Frame = +3

Query: 183 MLVLVLGDLHIPHRCSSXXXXXXXXXXXGRIQHILCTGNLCTKESYEYLKTLASDVHVVR 362
           MLVL++GD ++PHR ++            ++QH+LCTGNLC++E+++YL+TL+SDVH+VR
Sbjct: 1   MLVLLIGDFNLPHRAANISPKFRKLLVPNKMQHVLCTGNLCSRETFDYLRTLSSDVHIVR 60

Query: 363 GDFDENT-TYPEQKVITVGQFRIGLIHGHQVVPWGDEESLALVQRQLDVDILISGHTH 533
           G+FD+ T  YP+ KV+TVGQFRIG+ HGHQ++PWGD+  L L+ RQLDVDIL++G+T+
Sbjct: 61  GEFDDETLKYPDTKVVTVGQFRIGVCHGHQIIPWGDQRMLELLARQLDVDILVTGNTY 118


>Z47357-7|CAD90185.1|  191|Caenorhabditis elegans Hypothetical
           protein ZK1128.8b protein.
          Length = 191

 Score =  158 bits (383), Expect = 3e-39
 Identities = 64/117 (54%), Positives = 94/117 (80%), Gaps = 1/117 (0%)
 Frame = +3

Query: 186 LVLVLGDLHIPHRCSSXXXXXXXXXXXGRIQHILCTGNLCTKESYEYLKTLASDVHVVRG 365
           LVL++GD ++PHR ++            ++QH+LCTGNLC++E+++YL+TL+SDVH+VRG
Sbjct: 6   LVLLIGDFNLPHRAANISPKFRKLLVPNKMQHVLCTGNLCSRETFDYLRTLSSDVHIVRG 65

Query: 366 DFDENTT-YPEQKVITVGQFRIGLIHGHQVVPWGDEESLALVQRQLDVDILISGHTH 533
           +FD+ T  YP+ KV+TVGQFRIG+ HGHQ++PWGD+  L L+ RQLDVDIL++G+T+
Sbjct: 66  EFDDETLKYPDTKVVTVGQFRIGVCHGHQIIPWGDQRMLELLARQLDVDILVTGNTY 122


>Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical
           protein F55G7.4 protein.
          Length = 190

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 538 NL*VWPDIRISTSSCLCTSARDSSSPQGTT**P*MRPIRNCPT 410
           NL + P IR STSSCL +S ++S +       P +   RN PT
Sbjct: 125 NLHLSPKIRRSTSSCLRSSKKESLNKNLEKYKPDINTERNNPT 167


>L16559-5|AAA27932.2|  365|Caenorhabditis elegans Hypothetical
           protein C06E1.7 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -2

Query: 337 KVFKYSYDSLVHKFPVQSMCWILPGSSSFLNFGGRLLHL*G 215
           ++F+Y   +   K P+   C I      F N     LHL G
Sbjct: 123 QIFEYPVHNKATKVPLSEKCCIFDNPDKFNNISSEYLHLTG 163


>Z35604-7|CAA84682.1|  304|Caenorhabditis elegans Hypothetical
           protein ZK1058.9 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 427 LASFMVIRLCPGVTRSPWHW-CRGSSML 507
           L+S+M      G T +PW+W C G+S L
Sbjct: 255 LSSYMYSNKYLGTTAAPWYWSCYGNSGL 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,539
Number of Sequences: 27780
Number of extensions: 278811
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)