Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M21
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   1.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   1.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   2.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.1  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 321 EYLKTLASDVHVVRGDFDE 377
           E  +TL S+VH+ + ++DE
Sbjct: 34  ENCETLQSEVHITKDEYDE 52


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 321 EYLKTLASDVHVVRGDFDE 377
           E  +TL S+VH+ + ++DE
Sbjct: 34  ENCETLQSEVHITKDEYDE 52


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 148 STNSLHAKNNITPTGVYRIYRFYRNCKYINKNIS*TTTSLVPIPAAGGS 2
           S  ++H  NN      Y+ Y +  NCK +  NI+      +P+P   G+
Sbjct: 86  SNKTIHNNNN------YK-YNYNNNCKKLYYNINYIEQIPIPVPVYYGN 127


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 172 NINNSCL*STNSLHAKNN 119
           N  NSCL ST + ++K+N
Sbjct: 374 NRRNSCLGSTETYYSKHN 391


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 177 SKMLVLVLGDLHIPH 221
           SKM V+ L DLH P+
Sbjct: 390 SKMEVMELSDLHHPN 404


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 139 SLHAKNNITPTGVYRIYRFYRNCKYINKN 53
           S + +NNI   G+  I+    + K ++KN
Sbjct: 287 SQYEENNIEYEGIQDIFNTQSSAKVMSKN 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,925
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)