Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M20
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 244 4e-65
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 242 9e-65
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 151 2e-37
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 4e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.64
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 30 0.85
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.1
06_01_0155 + 1152607-1152721,1152781-1154129 28 3.4
06_01_0152 + 1136202-1136316,1136376-1137583 28 3.4
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 7.9
03_05_0300 - 22894282-22894628,22894713-22894809,22896062-228962... 27 7.9
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 27 7.9
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 244 bits (596), Expect = 4e-65
Identities = 111/149 (74%), Positives = 127/149 (85%)
Frame = +2
Query: 11 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 190
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 191 VGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGD 370
+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGD
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGD 283
Query: 371 IPGVRFKVVKVANVSLLALYKEQKERPRS 457
IPGVRFKVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 284 IPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 239 bits (584), Expect = 1e-63
Identities = 108/141 (76%), Positives = 122/141 (86%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 208
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 209 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 388
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 389 KVVKVANVSLLALYKEQKERP 451
KVVKV+ VSLLAL+KE+KE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 242 bits (593), Expect = 9e-65
Identities = 110/143 (76%), Positives = 124/143 (86%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 208
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 209 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 388
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 389 KVVKVANVSLLALYKEQKERPRS 457
KVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 151 bits (367), Expect = 2e-37
Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = +2
Query: 8 DRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVL 184
+RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVL
Sbjct: 64 ERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVL 122
Query: 185 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 340
EK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 320 DEVLVAGFGRKGHAVGDIPGVRFKVVK 400
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -2
Query: 402 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 271
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 1 ARGSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 120
A+ +C R +G +GY HG + + SSR + R G+ +P
Sbjct: 182 AKRACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 245 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 147
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>06_01_0155 + 1152607-1152721,1152781-1154129
Length = 487
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 62 CAPCEYPEVYPLR*REHDPR 3
CAPC PE YP + DPR
Sbjct: 177 CAPCPMPECYPQQNALFDPR 196
>06_01_0152 + 1136202-1136316,1136376-1137583
Length = 440
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 62 CAPCEYPEVYPLR*REHDPR 3
CAPC PE YP + DPR
Sbjct: 177 CAPCPMPECYPQQNALFDPR 196
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 396 TTLNLTPGMSPTAWPLRPNPATNTSS 319
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
>03_05_0300 -
22894282-22894628,22894713-22894809,22896062-22896200,
22896923-22897230
Length = 296
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 299 LNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEQKERPRS 457
L H+++ND V V+G H V D G + K+ +V+ L +Q +RP++
Sbjct: 117 LKHLKQNDLVYVSGLLNSYHKV-DPSGEKHTFYKI-HVTDLNYVLDQNQRPQN 167
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 441 FCSLYRARS-DTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGT 280
FC R+ + TFAT + P ++P WP+ +P S ++W P GT
Sbjct: 637 FCPSVRSLAMQTFATPGPILPGPPVTPMQWPVFISPPQQQLSACAVW---PQAGT 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,326
Number of Sequences: 37544
Number of extensions: 327443
Number of successful extensions: 970
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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