Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M19
(258 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 28 0.24
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 0.72
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 0.95
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 1.3
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 1.7
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 25 2.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 2.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 2.9
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 24 3.8
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 3.8
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 5.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 5.1
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 23 5.1
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 23 5.1
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple... 23 6.7
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 23 6.7
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 23 6.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 23 6.7
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe... 23 6.7
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 23 6.7
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 23 8.9
SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 8.9
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 23 8.9
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 23 8.9
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 23 8.9
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 23 8.9
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.9 bits (59), Expect = 0.24
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 256 LRRSLSSVFNICSLLSPF 203
LRR L+S+ N CSL+ PF
Sbjct: 495 LRRRLNSLVNACSLIQPF 512
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.2 bits (55), Expect = 0.72
Identities = 16/66 (24%), Positives = 36/66 (54%)
Frame = +1
Query: 13 KTQFRKKKLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN*KEGEQER*FNEGNESR 192
K + RKK+ ++ + ++D +S D +IP + KT + + N + +E F++ +++
Sbjct: 943 KKKDRKKRKSKSKQESSDSG-VSEDDEIPLSDARNKTKKRRVNRRVISEEYTFDQDSDAE 1001
Query: 193 RRKETE 210
+E E
Sbjct: 1002 GNQEEE 1007
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 0.95
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +2
Query: 125 DVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEDRRQR 247
++ K+++ ++ RE + +KK++ K A E+R++R
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRR 615
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 1.3
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +2
Query: 80 VLIKRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEDRRQRS 250
V + YQ+ A ++VRR ++RE + + +V + KK RK E+R+Q++
Sbjct: 2427 VFARAYQEVRNA-AIEVRR--ERREKRAIEQVVAPEVASRKKIRKNERKRENRKQKT 2480
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 1.7
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 16 TQFRKK-KLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN*KEGEQER*FNEGNESR 192
T ++K+ + +RN K T + + K + LKT EKN+ E+ N++
Sbjct: 115 TSYQKEIEEVRNEKEATQVKIHELLDAKWKEIAELKTQIEKNDQALSEKNHEVMVSNQAL 174
Query: 193 RRKET 207
+ K+T
Sbjct: 175 QMKDT 179
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 24.6 bits (51), Expect = 2.2
Identities = 14/65 (21%), Positives = 30/65 (46%)
Frame = +2
Query: 59 QQTET*LVLIKRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEDR 238
QQT+ ++ ++ K A L + ++REN D +K ++ R++ V+
Sbjct: 109 QQTDPPQIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSALRRRMRRREGRVQKA 168
Query: 239 RQRSP 253
+ +P
Sbjct: 169 LRPTP 173
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 61 TDGNLISIDQKIPKNVGSLK 120
TD L+S+ +K+P+NV LK
Sbjct: 1145 TDSVLLSMAKKLPRNVKELK 1164
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 2.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 80 LIKFPSVVIL*FLISFFLRNCVF 12
++ F S IL FL FFL CVF
Sbjct: 144 IVYFSSFPILHFLFFFFLCVCVF 166
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 23.8 bits (49), Expect = 3.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 91 KIPKNVGSLKTGREKNN*KEGEQER*FNEGNESRR---RKETEKED 219
K+PK V S ++KN G E N+ ++ E+E ED
Sbjct: 27 KLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNESEDED 72
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 23.8 bits (49), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 143 KKRENKKDDLTREMKVDAEKKRRKKTANVED 235
KKR N + KVD +KK+ +T ++ D
Sbjct: 633 KKRRNLNYNENLSCKVDLDKKKMLETLSLSD 663
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 23.4 bits (48), Expect = 5.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 86 IKRYQKTWEA*KLDVRRTTKK--RENKKDDL 172
++RY T A +LDVRR + R +K DL
Sbjct: 152 LRRYYSTRTAQRLDVRRPASRSSRYSKTSDL 182
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 133 KNN*KEGEQER*FNEGNESRRRKETEKED 219
K++ +E E+E+ + E R+ +ETE+ED
Sbjct: 730 KSHDREKEKEK--KKDREHRKHRETEEED 756
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +2
Query: 158 KKDDLTREMKVDAEKKRRKKTANVEDRRQRS 250
KK++ R+ + EKK +K+ ++++++S
Sbjct: 443 KKEEKRRKKEAKKEKKEKKEKKEKKEKKKKS 473
Score = 22.6 bits (46), Expect = 8.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 110 EA*KLDVRRTTKKRENKKDDLTREMKVDAEKKRRKK 217
EA K + +R +K+E KK+ +E K EKK +KK
Sbjct: 440 EAAKKEEKR--RKKEAKKE--KKEKKEKKEKKEKKK 471
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 89 KRYQKTWEA*KLDVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEDRR 241
+ +QK WE L V++ + ++D T + A K+ +++ +D +
Sbjct: 1268 EEFQKWWEEESLRVQKELGILKTERDTSTNRKQGQASKQPQRRHRKEKDSK 1318
>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 447
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 34 KLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN 141
KL+R H DG I+++ + K + TG +N
Sbjct: 77 KLVRMHIFQFDGQYITLNSEFRKQFITALTGGGNHN 112
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 118 KTGREKNN*KEGEQER*FNEGNESRRRKETEKE 216
+TG +K G+++ E E RRR + ++E
Sbjct: 754 ETGNKKRKYMYGDEDELEQEQEERRRRAQLDRE 786
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 19 QFRKKKLIRNHKMTTD 66
Q RK+K++RNH T D
Sbjct: 54 QTRKRKVVRNHLDTGD 69
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 46 NHKMTTDGNLISIDQKIPKNVGSLKTGRE 132
N ++ DG L S+ K P+ V +++ G+E
Sbjct: 1103 NQDISGDGKLHSLRMKEPEVVQTIRPGQE 1131
>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 305
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 83 ILIKFPSVVIL*FLISFFLRNCVFYPR 3
IL K P I + I+F +RNC P+
Sbjct: 176 ILDKIPDNSIDMYTIAFGIRNCTHIPK 202
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 249 DRCLLSSTFAVFFL 208
+RCLLSSTF+ F+
Sbjct: 296 ERCLLSSTFSDVFV 309
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 122 LDVRRTTKKRENKKDDLTREM 184
L V+ T K+R + KD+ TR M
Sbjct: 25 LRVKSTKKRRSSTKDEETRGM 45
>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 22.6 bits (46), Expect = 8.9
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +1
Query: 28 KKKLIRNHKMTTDGNLISIDQKIPKNVGSLKTGREKNN*KEGEQER*FNEGNESRRRKE 204
K+ + N K+ T N ++ QK+ K++G+ N + + R +S ++KE
Sbjct: 7 KENVPTNQKLDTCKNQSTVHQKVNKSLGNSNKVLRSNAVQSDKANREPRRITKSVKKKE 65
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 22.6 bits (46), Expect = 8.9
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 98 QKTWEA*KLD--VRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEDRRQR 247
+K ++ K+D RRT+ + + E ++ K RRK T + RQ+
Sbjct: 124 KKKYKKIKVDPSARRTSSRMHTVLMAQSTETRLQEAKPRRKYTVSASANRQK 175
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 22.6 bits (46), Expect = 8.9
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 146 KRENKKDDLTREMKVDAEKKR-RKKTANVEDRRQRSP 253
+ NK+ +LT+ V +K+R K N+ D SP
Sbjct: 897 RNNNKEVNLTKAENVGIKKRRIMKNENNIYDFEDHSP 933
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 137 TTKKRENKKDDLTREMKVDAEKKRRKKTA 223
T KK++ DD + +K + K K +A
Sbjct: 89 TDKKKKKDNDDFKQNLKSSSNKTEEKYSA 117
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 22.6 bits (46), Expect = 8.9
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +2
Query: 125 DVRRTTKKRENKKDDLTREMKVDAEKKRRKKTANVEDR 238
D+R NKKD E+ + RR +ED+
Sbjct: 13 DLRSLESSTLNKKDTAINELNPEQNDTRRSTDLLLEDK 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 950,414
Number of Sequences: 5004
Number of extensions: 15967
Number of successful extensions: 84
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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