Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M18
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...   107   8e-25
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...   105   3e-24
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   9.1  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score =  107 bits (258), Expect = 8e-25
 Identities = 56/115 (48%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
 Frame = +1

Query: 148 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTP 324
           P  G RLY KA    ++R     H  T+++KIEG   + +A FY GKR  YVY++ K   
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV- 60

Query: 325 IPGGPRGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVMLYPSRI 489
                RG  +K+R IWG + RPHGNSG VRARF  NLPA+  G  +RVMLYPS I
Sbjct: 61  -----RG--SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score =  105 bits (253), Expect = 3e-24
 Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
 Frame = +1

Query: 148 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTP 324
           P  G RLY KA    ++R     H  T+L+KIEG   + +A FY GKR  +VY++ K  P
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--P 59

Query: 325 IPGGPRGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVMLYPSRI 489
           + G      +K+R IWG V+RPHGNSG VRARF  NLP +  G  +RVMLYPS +
Sbjct: 60  VRG------SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 526 ILHLSLLKQEDFRSWKDT 473
           I  L +LK+EDF  W D+
Sbjct: 385 ITKLLILKEEDFEEWTDS 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,243
Number of Sequences: 5004
Number of extensions: 42430
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)