Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M18
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)            131   3e-31
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29)                    29   2.3  
SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)                     29   3.1  
SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)                   28   4.1  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_18932| Best HMM Match : Flagellin_C (HMM E-Value=1.9)               28   4.1  
SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                  27   7.2  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 27   9.5  
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)             27   9.5  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score =  131 bits (317), Expect = 3e-31
 Identities = 62/104 (59%), Positives = 75/104 (72%)
 Frame = +1

Query: 160 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 339
           RLY K +  G+KRGLRNQH NT+L+KIEG  +R +  FY GKR  +VYRAK +T   G  
Sbjct: 6   RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYLGKRLAFVYRAKNKTVAKGDK 65

Query: 340 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVM 471
             K TKLR IWGKVTR HGNSG VRA+F+ NLP +AMG  +RV+
Sbjct: 66  --KATKLRVIWGKVTRAHGNSGVVRAKFRHNLPPKAMGATVRVI 107


>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 485 LEGYSIT---RILCPMACAGRLDLNLARTPPELPCGRVTLPQIARSLVFLPRGPPGI 324
           +E Y++T   RI  P+    +   NL   PP + C R+ LP+   ++  +P   P I
Sbjct: 82  IEPYNLTTTRRITIPLLPKVKSSKNLNEMPPRIQCMRIRLPRFEYTISHVPVQKPEI 138


>SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29)
          Length = 375

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 337 DPRGSASFSLHGRHTRNACQHRKVHHCDPLYLQSLTKLYFHV 212
           DP    S    GR+ R+   H  +  C+P++ ++LT   FH+
Sbjct: 274 DPYADVSICHAGRYLRHKQSHTLLQECNPIFNETLT---FHI 312


>SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)
          Length = 604

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -3

Query: 395 PCGRVTLPQIARSLVFLPRGPPGIGVLFFAR*TYTQRLPA*KSASLRSFVPSIFNKA 225
           P   VTL Q  R       GP G    + AR T   R+ + +   LRS+VPS   +A
Sbjct: 34  PYRHVTLHQTVRGYPGSVPGPRGEVTAYPARVTRDGRVTSLQGKDLRSYVPSWMRRA 90


>SB_58335| Best HMM Match : SMC_N (HMM E-Value=0.023)
          Length = 354

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 262 DALFYAGKRCVYVYRAKKRTPIPGGPRGKKTKLR 363
           D+ F+AG   +     K   P+ GGPR +  +LR
Sbjct: 168 DSTFWAGPETISRRMLKGEVPVQGGPRKEAKRLR 201


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = -1

Query: 406  HRSCHAGGSPCPRLHEA*FSCHVDPRGSASFSLHGRHTRNACQHRKVHHCDPLYLQSLTK 227
            H S       CPR+    F+C V P  S  F+      R+AC H  V  C P+  +  T 
Sbjct: 1251 HLSVRVCSPVCPRVFTCLFAC-VYPSVSRVFTC-----RSACVHLSVRVCSPVCPRVFTC 1304

Query: 226  LY 221
            L+
Sbjct: 1305 LF 1306


>SB_18932| Best HMM Match : Flagellin_C (HMM E-Value=1.9)
          Length = 247

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -2

Query: 507 LNRKILDPGRIQHNTYPMSHGLRWQVRLEPGTDTTGVAMRAGHLAPDCTKLSFLATWTPG 328
           L+R +LD    Q +++   +   W V    G D   + + +  L P  +    L  W PG
Sbjct: 37  LHRLLLDTDNNQIDSWETINPTSWAVNTSTGIDKGNLVINSHFLEPSRSYFLRLNAWKPG 96


>SB_7893| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 391

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 294 HATLASIEKCITAILCTFNL*QSCIFMLVAQTTFV 190
           H  L  I +C TA L   NL  +C+ M V   +FV
Sbjct: 68  HVKLRIIRQCYTASLALGNLLMACVVMPVRIISFV 102


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 304 RAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSG-GVRARFKS 429
           R ++R P P  PR       + WG  T   GN+G   R R K+
Sbjct: 79  RRRRRRPPPCPPRNCAVSAWSSWGPCTHQCGNAGTQTRTRTKT 121


>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 437 GRLDLNLARTPPELPCGRVTLPQI 366
           G  DLN+ +T P + C R+  P++
Sbjct: 257 GLFDLNIGQTIPSVTCRRIPFPEL 280


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 346  CHVDPRGSASFSLHGRHTRNACQHRKVHHCDPLY 245
            CH+ P G ++F L G  +++ C+  K +  +  Y
Sbjct: 2779 CHMCPAGLSTFGLQGATSKDQCRECKDYEPEDKY 2812


>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
          Length = 340

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 346 CHVDPRGSASFSLHGRHTRNACQHRKVHHCDPLY 245
           CH+ P G ++F L G  +++ C+  K +  +  Y
Sbjct: 80  CHMCPAGLSTFGLQGATSKDQCRECKDYEPEDKY 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,747
Number of Sequences: 59808
Number of extensions: 386548
Number of successful extensions: 960
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)