Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M18
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 425  LNLARTPPELPCGRVTLPQ 369
            L L   PP   CG V++PQ
Sbjct: 1263 LMLQHAPPAYSCGTVSVPQ 1281


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 331 RGSASFSLHGRHTRNACQHRKVHHCDPLYLQSLTKLYF 218
           RGS+    HG HT         HH      QSL  L++
Sbjct: 330 RGSSPHHQHGNHTMGPTM-GPPHHHHHHQTQSLQHLHY 366


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 135 FTHHLGWFCG 106
           ++H LGW CG
Sbjct: 527 WSHVLGWLCG 536


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 135 FTHHLGWFCG 106
           ++H LGW CG
Sbjct: 580 WSHVLGWLCG 589


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -2

Query: 339 WTPGDRR--PFLCTVDIHATLASIEK 268
           W  G +R     CTV +H T+ S +K
Sbjct: 93  WVAGAQRGNEQRCTVTMHGTVQSYDK 118


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 397 CHAGGSPCPRL 365
           CH  G P PR+
Sbjct: 423 CHVAGEPLPRV 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,082
Number of Sequences: 438
Number of extensions: 3048
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)