Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M18
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...   114   3e-26
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...   113   5e-26
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...   113   9e-26
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...   112   1e-25
At2g25370.1 68415.m03037 zinc finger protein-related contains we...    27   5.8  
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo...    27   7.7  

>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score =  114 bits (275), Expect = 3e-26
 Identities = 54/110 (49%), Positives = 71/110 (64%)
 Frame = +1

Query: 160 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 339
           RLY +    GYKR   NQ+ NT+L++IEG   + +  +Y GKR  Y+Y+AK +       
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK------ 64

Query: 340 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVMLYPSRI 489
               +  R IWGKVTRPHGNSG VRA+F SNLP ++MG R+RV +YPS I
Sbjct: 65  --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score =  113 bits (273), Expect = 5e-26
 Identities = 53/110 (48%), Positives = 70/110 (63%)
 Frame = +1

Query: 160 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 339
           RLY +    GYKR   NQ+ NT+L+++EG     +  +Y GKR  Y+Y+AK +       
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK------ 64

Query: 340 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVMLYPSRI 489
               +  R IWGKVTRPHGNSG VRA+F SNLP ++MG R+RV +YPS I
Sbjct: 65  --NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score =  113 bits (271), Expect = 9e-26
 Identities = 53/110 (48%), Positives = 71/110 (64%)
 Frame = +1

Query: 160 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 339
           RLY +    GYKR   NQ+ NT+L++IEG   + +  +Y GKR  Y+Y+AK +       
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63

Query: 340 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVMLYPSRI 489
               +  R IWGKVTRPHGNSG VR++F SNLP ++MG R+RV +YPS I
Sbjct: 64  --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score =  112 bits (270), Expect = 1e-25
 Identities = 53/110 (48%), Positives = 71/110 (64%)
 Frame = +1

Query: 160 RLYAKAVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVYRAKKRTPIPGGP 339
           RLY +    GYKR   NQ+ NT+L++IEG   + +  +Y GKR  Y+Y+AK +       
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63

Query: 340 RGKKTKLRAIWGKVTRPHGNSGGVRARFKSNLPAQAMGHRIRVMLYPSRI 489
               +  R IWGKVTRPHGNSG VR++F SNLP ++MG R+RV +YPS I
Sbjct: 64  --NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>At2g25370.1 68415.m03037 zinc finger protein-related contains weak
           similarity to zinc fingers and Pfam:PF01485 IBR domain
          Length = 603

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = -2

Query: 459 PMSHGLRWQVRLEPGTDTTGVAMRAGHLAPDCTKLSFLATWTPGDRRPFLCTVDIHATLA 280
           P S   RW  R  P T  +    +      D    SF+  WT   +RP      I AT+A
Sbjct: 17  PCSFPCRWIQRQRPATSDSNQRQQPATATSDNIHCSFVCRWT---QRP------ITATIA 67

Query: 279 SIEKCITAILCTFN 238
           +  +C+  I   F+
Sbjct: 68  NNCRCVRLIAKNFS 81


>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985]
          Length = 951

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = -1

Query: 415 HGHHRSCHAGGSPCPRLHEA*F--SCHVDPRGSASFSLHGRHTRNACQHRKVHHC 257
           HGH   C    S  P  HE     SCH  P G  S    G+ ++   QH     C
Sbjct: 793 HGHDSGCCGDKSQQPHQHEVQVQQSCHNKPSGLDSGCCGGK-SQQPHQHELQQSC 846


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,464,119
Number of Sequences: 28952
Number of extensions: 252776
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)