Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M17
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   0.64 
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   1.5  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   3.4  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   3.4  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   3.4  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    24   7.9  

>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 137 RLARPRNARFHYNANVKFRAQMPRITRRSAYKH 39
           RL +P N     N  ++F+ Q+P ++RR+ Y+H
Sbjct: 134 RLPKPFN-----NLLIQFQIQVPNVSRRTVYRH 161


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 226 GCFSNRW*LVFLTFISAFLGA-KLNN-DSLLID*FEVIQ 336
           GC  N W LV L F   F G+  L+N    L D F  IQ
Sbjct: 183 GCAQNIWTLVILRFFQGFFGSTPLSNCGGTLSDLFTPIQ 221


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 134 LARPRNARFHYNANVKFRAQMPRITRRSAYKHNVKTIDVFFRPR 3
           LARP N +F    + KF  Q+     R  Y  NV  +D +  PR
Sbjct: 25  LARPANLQFLKTNSSKFVPQVTANVSRRMYHKNV--LDHYNNPR 66


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 101 NANVKFRAQMPRITRRSAYKHNVKTIDVFFRPR 3
           +A   F+A +PR  RR A  HN+K I    R R
Sbjct: 65  SAQRAFQA-LPRCLRRRAASHNIKRIPKGLRDR 96


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 147 CILKKNAYYFYKKKEPDRFSCRLFSTGLLFE 239
           C++ +++ Y    K P  F C  F+ G+  E
Sbjct: 97  CVISRDSGYTKADKNPGSFFCLYFARGMCSE 127


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 259 KTLTTTGSKSNPVEKSRQENRSGSFFL 179
           K+L  T   +NP  K R+ N   ++FL
Sbjct: 520 KSLINTDHTANPTIKKRKSNTLDTYFL 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,032
Number of Sequences: 5004
Number of extensions: 22231
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)