Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M17
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0369 + 33425251-33425778,33425864-33426051,33426152-334262...    27   5.6  
01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728     26   9.8  

>03_06_0369 +
           33425251-33425778,33425864-33426051,33426152-33426251,
           33426366-33426578,33426616-33426822,33426908-33427095,
           33427234-33427492
          Length = 560

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 135 AGYYCILKKNAYYFYKKKEPD 197
           A Y C+++ N  +FY + EP+
Sbjct: 186 ASYPCVVQNNILWFYPRSEPE 206


>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
          Length = 316

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 276 GAYECQKH*LPPVRKATQLRRADKKIDLVLFFYKNN 169
           G Y C      P RK  +  RAD  + LV + +++N
Sbjct: 119 GYYRCSSSKGCPARKQVERSRADPTVLLVTYSFEHN 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,610,517
Number of Sequences: 37544
Number of extensions: 119852
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)