Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M17
(353 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20) 28 2.5
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007) 27 4.4
SB_22755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_57894| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_4407| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_56938| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_50462| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_43788| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_41355| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_34735| Best HMM Match : NUDIX (HMM E-Value=6.1) 26 7.7
SB_33840| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_23283| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_20968| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_17943| Best HMM Match : NUDIX (HMM E-Value=6.9) 26 7.7
SB_17800| Best HMM Match : Endonuclease_7 (HMM E-Value=0.032) 26 7.7
SB_17153| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_15202| Best HMM Match : Rho_N (HMM E-Value=2.3e-05) 26 7.7
SB_11321| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18) 26 7.7
SB_9405| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00011) 26 7.7
SB_8141| Best HMM Match : Rho_N (HMM E-Value=0.011) 26 7.7
SB_7531| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_1355| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_6| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_52355| Best HMM Match : GnsAB (HMM E-Value=4.4) 26 7.7
SB_51281| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_47604| Best HMM Match : Toxin_23 (HMM E-Value=2.3) 26 7.7
SB_45728| Best HMM Match : NUDIX (HMM E-Value=6.7) 26 7.7
SB_43301| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_42931| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_40351| Best HMM Match : NUDIX (HMM E-Value=9) 26 7.7
SB_35234| Best HMM Match : NUDIX (HMM E-Value=9) 26 7.7
SB_35049| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_31660| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_31577| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_31523| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_23247| Best HMM Match : Rho_N (HMM E-Value=0.0066) 26 7.7
SB_18569| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_18280| Best HMM Match : Toxin_23 (HMM E-Value=2.3) 26 7.7
SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12) 26 7.7
SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
SB_6190| Best HMM Match : NUDIX (HMM E-Value=7.3) 26 7.7
SB_3816| Best HMM Match : Rho_N (HMM E-Value=0.0007) 26 7.7
SB_1634| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.7
>SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20)
Length = 360
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 198 DLVLFFYKNNKHFFLIYSNTPLSATP*RAVSL*RECEISRSNASHYAKE 52
DL L++ +N IYS P A P + EC S Y KE
Sbjct: 51 DLDLYYENDNSTILDIYSENPSGADPYNYTPVTNECGNYNSEGDCYNKE 99
>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1133
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 299 LFNLAPKKALMNVKNTNYH 243
L LA KKA++NVKN N H
Sbjct: 303 LSELASKKAIINVKNENDH 321
>SB_22755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 26.6 bits (56), Expect = 5.8
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -3
Query: 246 PPVRKATQLRRADKKIDLVLFFY 178
PP+R +T++R+A +++DL L +
Sbjct: 91 PPLRHSTRIRKAPERLDLKLCLF 113
>SB_57894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 14 LASKKAIINVKNENEH 29
>SB_4407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 26.6 bits (56), Expect = 5.8
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -3
Query: 246 PPVRKATQLRRADKKIDLVLFFY 178
PP+R +T++R+A +++DL L +
Sbjct: 58 PPLRHSTRIRKAPERLDLKLCLF 80
>SB_56938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 172 LASKKAIINVKNENDH 187
>SB_50462| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 355
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 306 LASKKAIINVKNENDH 321
>SB_43788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 49 LASKKAIINVKNENDH 64
>SB_41355| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 992
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 306 LASKKAIINVKNENDH 321
>SB_34735| Best HMM Match : NUDIX (HMM E-Value=6.1)
Length = 431
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 176 LASKKAIINVKNENDH 191
>SB_33840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 306 LASKKAIINVKNENDH 321
>SB_23283| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1128
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 298 LASKKAIINVKNENDH 313
>SB_20968| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 303
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 254 LASKKAIINVKNENDH 269
>SB_17943| Best HMM Match : NUDIX (HMM E-Value=6.9)
Length = 282
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 123 LASKKAIINVKNENDH 138
>SB_17800| Best HMM Match : Endonuclease_7 (HMM E-Value=0.032)
Length = 644
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 18 LASKKAIINVKNENDH 33
>SB_17153| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 393
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 306 LASKKAIINVKNENDH 321
>SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1998
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 381 LASKKAIINVKNENDH 396
>SB_15202| Best HMM Match : Rho_N (HMM E-Value=2.3e-05)
Length = 416
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 299 LASKKAIINVKNENDH 314
>SB_11321| Best HMM Match : Endonuclease_7 (HMM E-Value=0.18)
Length = 704
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 18 LASKKAIINVKNENDH 33
>SB_9405| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00011)
Length = 1092
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 299 LASKKAIINVKNENDH 314
>SB_8141| Best HMM Match : Rho_N (HMM E-Value=0.011)
Length = 299
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 271 LASKKAIINVKNENDH 286
>SB_7531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 306 LASKKAIINVKNENDH 321
>SB_1355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 49 LASKKAIINVKNENDH 64
>SB_6| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 486
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 215 LASKKAIINVKNENDH 230
>SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 971
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 246 LASKKAIINVKNENDH 261
>SB_52355| Best HMM Match : GnsAB (HMM E-Value=4.4)
Length = 384
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 248 LASKKAIINVKNENDH 263
>SB_51281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 141 YYCILKKNAYYFYKKKEPDRFSCRLFSTGLLFEPVVVSV 257
Y +K+ + K E RF+C +F + EPV S+
Sbjct: 17 YSTKIKRYFAFITKHPEEPRFACHVFMSEFSTEPVAYSI 55
>SB_47604| Best HMM Match : Toxin_23 (HMM E-Value=2.3)
Length = 407
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 199 LASKKAIINVKNENDH 214
>SB_45728| Best HMM Match : NUDIX (HMM E-Value=6.7)
Length = 283
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 126 LASKKAIINVKNENDH 141
>SB_43301| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 393
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 306 LASKKAIINVKNENDH 321
>SB_42931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 186 LASKKAIINVKNENDH 201
>SB_40351| Best HMM Match : NUDIX (HMM E-Value=9)
Length = 284
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 126 LASKKAIINVKNENDH 141
>SB_35234| Best HMM Match : NUDIX (HMM E-Value=9)
Length = 356
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 199 LASKKAIINVKNENDH 214
>SB_35049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 253 LASKKAIINVKNENDH 268
>SB_31660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1185
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 388 LASKKAIINVKNENDH 403
>SB_31577| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 871
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 306 LASKKAIINVKNENDH 321
>SB_31523| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 1104
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 306 LASKKAIINVKNENDH 321
>SB_23247| Best HMM Match : Rho_N (HMM E-Value=0.0066)
Length = 835
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 300 LASKKAIINVKNENDH 315
>SB_18569| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 708
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 299 LASKKAIINVKNENDH 314
>SB_18280| Best HMM Match : Toxin_23 (HMM E-Value=2.3)
Length = 315
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 18 LASKKAIINVKNENDH 33
>SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)
Length = 1970
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 430 LASKKAIINVKNENDH 445
>SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 329 TSNQSIKRESLFNLAPKKALMNVKNTNYHR 240
TS Q IKR +L AL +KNT+ HR
Sbjct: 197 TSQQPIKRVIEIHLPEVNALFFMKNTSNHR 226
>SB_6190| Best HMM Match : NUDIX (HMM E-Value=7.3)
Length = 234
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 199 LASKKAIINVKNENDH 214
>SB_3816| Best HMM Match : Rho_N (HMM E-Value=0.0007)
Length = 632
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 299 LASKKAIINVKNENDH 314
>SB_1634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 26.2 bits (55), Expect = 7.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 290 LAPKKALMNVKNTNYH 243
LA KKA++NVKN N H
Sbjct: 306 LASKKAIINVKNENDH 321
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,315,379
Number of Sequences: 59808
Number of extensions: 158195
Number of successful extensions: 339
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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