Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M17
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78541-3|CAD44120.1|  733|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z70269-4|CAA94223.2|  733|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z70269-1|CAD44161.1|  770|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U64860-1|AAB04991.1|  155|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U88308-12|AAK68216.1|  467|Caenorhabditis elegans Uncoordinated ...    26   6.6  
AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b prote...    26   6.6  

>Z78541-3|CAD44120.1|  733|Caenorhabditis elegans Hypothetical
           protein ZK1086.1a protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 141 YYCILKKNAYYFYKKKEPDR 200
           YYC+LK      YK K+ DR
Sbjct: 58  YYCVLKPGLLILYKHKKADR 77


>Z70269-4|CAA94223.2|  733|Caenorhabditis elegans Hypothetical
           protein ZK1086.1a protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 141 YYCILKKNAYYFYKKKEPDR 200
           YYC+LK      YK K+ DR
Sbjct: 58  YYCVLKPGLLILYKHKKADR 77


>Z70269-1|CAD44161.1|  770|Caenorhabditis elegans Hypothetical
           protein ZK1086.1b protein.
          Length = 770

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 141 YYCILKKNAYYFYKKKEPDR 200
           YYC+LK      YK K+ DR
Sbjct: 95  YYCVLKPGLLILYKHKKADR 114


>U64860-1|AAB04991.1|  155|Caenorhabditis elegans Hypothetical
           protein R106.1 protein.
          Length = 155

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +3

Query: 15  KYIYCLYIMFISTPSRNARHLSAKFHIRVIV 107
           ++I+  ++  + + S  + H+S+KFH R++V
Sbjct: 74  RHIFYTFLCLLCSHSPLSLHISSKFHTRLVV 104


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 344 SLGCITSNQSIKRESLFNLAPKKALMNVKNTNYHRFEKQPS 222
           S+G    N+S K   + +L+P + L N  NT+   F  +PS
Sbjct: 350 SMGGSFGNKSTKVPDVESLSPPEILRNPSNTSGGAFGSKPS 390


>U88308-12|AAK68216.1|  467|Caenorhabditis elegans Uncoordinated
           protein 11, isoform e protein.
          Length = 467

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 110 FHYNANVKFRAQMPRITRRSAYKHN 36
           FH+N+N KF   M R  +R+ +K N
Sbjct: 420 FHHNSNTKFNWFMQRWLQRTLHKLN 444


>AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b protein
           protein 50 protein.
          Length = 532

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 45  ISTPSRNARHLSAKFHIRVIVKPRVTGSR*AGYYCILKK-NAYYFYKKK 188
           IS  S+  + L  +FHI   ++PR+      GY   L    ++Y +K +
Sbjct: 337 ISMVSKKTKELVREFHILKNIRPRLAFYDSIGYIVALSSVGSFYLFKNE 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,078,831
Number of Sequences: 27780
Number of extensions: 123069
Number of successful extensions: 250
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)