Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M15
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   2.0  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   3.5  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    24   4.6  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    24   6.1  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    23   8.1  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    23   8.1  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 221 VEEVTKLYSSPSLRSSTVGVTALAALRVISPTPSAF--MKSSKFSDVV 84
           V   T   SSPS  SST  + ++++    S + S+F  + SS FS V+
Sbjct: 131 VSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSSSGFSTVL 178


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +1

Query: 76  YKMTTSENFDDFMKALGVGLITR 144
           +K+++++  D+F++A   G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 37  KNLPL--AMDFIGKKYKMTTSENFDDFMKALGVGLI 138
           KNLP   A++ + KK+ MT  E    F+ A G GL+
Sbjct: 243 KNLPFLQAVEQLAKKFGMTMPEFSLLFIMASGNGLV 278


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 196 EYNFVTS--STFKTTEMKFKPGEEFEEERADGVK 291
           +YNF ++  +  K  + KFK  E+   E+ +G+K
Sbjct: 728 QYNFASNQLNEAKIEQAKFKRDEQLLVEKIEGIK 761


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 218 EEVTKLYSSPSLRSSTVGVTALAALRVISPTP 123
           +E T +YS+ SL  +  G  ALA L  +  TP
Sbjct: 7   KESTIVYSALSLAQAGRGPEALALLEPLKSTP 38


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 97  NFDDFMKALGVGLITRKAANAVTPTVELRKEGDEYNFVTSSTFK 228
           N DD ++ L  G       NA     ++ K G   +F+T S  K
Sbjct: 225 NIDDLLEQLNEGNDISHVVNATRSKKKVCKGGQVISFLTESLTK 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,011
Number of Sequences: 5004
Number of extensions: 22221
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)