Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M15
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 30 0.33
06_03_0106 + 16702019-16702600 29 1.0
02_04_0525 - 23672984-23673085,23673315-23673419,23673820-236739... 29 1.0
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 27 3.1
05_07_0289 + 29004842-29005213,29005318-29005605,29005707-290058... 27 4.1
08_02_0350 + 16123139-16124041 26 5.4
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 26 5.4
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451... 26 7.2
07_03_1455 - 26659480-26659758,26659907-26660149 26 7.2
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283... 25 9.5
04_04_0385 - 24858580-24858721,24858772-24858850,24859155-248593... 25 9.5
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 25 9.5
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 25 9.5
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 169 TVELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEE 273
T +L+KE DEY ++S + TE K ++FEEE
Sbjct: 477 TAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFEEE 511
>06_03_0106 + 16702019-16702600
Length = 193
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 195 VTFLAQLHGWGHSISRLAGDQSHTECLHEIVEVL 94
VT HGW H + R+ S +C+ E E L
Sbjct: 81 VTAFCPHHGWTHHLRRVISPPSSPDCMPETPETL 114
>02_04_0525 -
23672984-23673085,23673315-23673419,23673820-23673979,
23674085-23674162,23674383-23674524,23674641-23674785,
23674888-23674950,23675042-23675101,23675364-23675441,
23675524-23675598,23675744-23675860,23675960-23676190,
23676300-23676419,23676512-23676588,23676669-23676769,
23676844-23676950,23677094-23677251,23677383-23677599
Length = 711
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +1
Query: 40 NLPLAMDFIGKKYKMTTSENFDDFMKALGVGLITRKAANAVTPTVELRKEGD 195
N+PL D + MTTS+ D V I K A+ V TV+ RKE D
Sbjct: 97 NVPLGSDHPIRIQTMTTSDTKDVAKTVEEVMRIADKGADFVRITVQGRKEAD 148
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -1
Query: 251 GLNFISVVLNVEEVTKLYSSPSLRSSTVGVTALAALRVISPTPSAFMKSSKFSDVVILYF 72
G+ F S++L E +T L + T+G+T L A + + F KS+K+S F
Sbjct: 438 GVGFFSLILFGEPLTPLMA-------TLGMTPLLAAVYVGAMQNIFSKSAKYS-----LF 485
Query: 71 LPMKSMA 51
P K MA
Sbjct: 486 DPCKEMA 492
>05_07_0289 +
29004842-29005213,29005318-29005605,29005707-29005853,
29005939-29006175,29006261-29006524,29006609-29006725,
29006991-29007042,29007903-29008303,29008380-29008598,
29008692-29008925
Length = 776
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 40 NLPLAMDFIGKKYK-MTTSENFDDFMKALGVGLIT 141
NL L + I K Y M+ E FDD +A GLIT
Sbjct: 271 NLRLVLYTINKYYPDMSNDERFDDICQAGANGLIT 305
>08_02_0350 + 16123139-16124041
Length = 300
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 236 SVVLNVEEVTKLYSSPSLRSSTVGVTALAALRVISPT--PSA 117
SV + T L +PS +S++G+ AL SPT PSA
Sbjct: 39 SVAMAAPAATSLPGAPSPAASSLGLAALVTPACFSPTALPSA 80
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 309 SSYRLHLDTISAFLFEFFTRLELHLRGLECRRGDEIVFVTF 187
S YR +D++ AFL F L L+G+ +R +IVF F
Sbjct: 1082 SIYR-RIDSLEAFLKSFKFLSTLDLQGISIKRLPKIVFDLF 1121
>12_01_0556 -
4514686-4514868,4515168-4515290,4515381-4515617,
4515747-4516358
Length = 384
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 139 TRKAANAVTPTVELRKEGDEYNFVTSSTFKTTEMKFKPGEE 261
T ++A TVEL K+GD F T S K ++F G+E
Sbjct: 263 TGRSAVIDVGTVELIKKGDIKVFGTISCIKGNVVEFDDGKE 303
>07_03_1455 - 26659480-26659758,26659907-26660149
Length = 173
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 169 TVELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEE-ERAD 282
TV LR E +TSS TE K GEEF++ E AD
Sbjct: 122 TVSLRPP--ELPLLTSSRLNPTETPHKEGEEFKKGEGAD 158
>06_01_0394 -
2835438-2835896,2836664-2836913,2837197-2837669,
2838941-2840608
Length = 949
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 165 GHSISRLAGDQSHTECL 115
GH + RLAGD+ H L
Sbjct: 741 GHRVRRLAGDEEHRRAL 757
>04_04_0385 -
24858580-24858721,24858772-24858850,24859155-24859302,
24859939-24860239,24860327-24860407,24860727-24860875,
24861073-24861215,24861404-24861556,24861664-24861742,
24861851-24861916
Length = 446
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 163 TPTVELRKEGDEYNFVTSST--FKTTEMKFKPGEEFEEER 276
T VE +E +E N V +T F +++ KP +EF+ ER
Sbjct: 166 TALVEFSEE-EEANAVLKNTLVFAEADLEIKPKKEFDTER 204
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 25.4 bits (53), Expect = 9.5
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -1
Query: 251 GLNFISVVLNVEEVTKLYSSPSLRSSTVGVTALAALRVISPTPSAFMKSSKFSDVVILYF 72
G+ F S++L + +T P L +T+G+T L A + + F KS+K+S F
Sbjct: 460 GVGFFSLILFGQPLT-----PML--ATMGMTPLLAAVYVGALQNIFSKSAKYS-----LF 507
Query: 71 LPMKSMA 51
P K MA
Sbjct: 508 DPCKEMA 514
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 172 VELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEERADGVKV 294
V L EG +F+ S TE++F E + E +DGV++
Sbjct: 2834 VTLGAEGSALDFLDSVLMSDTELRFV--EPLQYEESDGVEL 2872
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,167,722
Number of Sequences: 37544
Number of extensions: 161473
Number of successful extensions: 395
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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