Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M15
(311 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 31 0.25
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0) 29 0.58
SB_12561| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_26334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_35349| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 26 7.2
SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_41551| Best HMM Match : Transglut_N (HMM E-Value=3.1e-25) 25 9.5
SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 30.7 bits (66), Expect = 0.25
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 165 GHSISRLAGDQSHTECLHEIVEVLGCGH 82
GH +R GD ++C+ +I + L CGH
Sbjct: 372 GHPCARKCGDTCTSKCIEKIEKTLPCGH 399
>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 672
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 166 PTVELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEERADGVKVK 297
P +L +EGDE + T KTTE K G+ ER+ VK
Sbjct: 46 PDSQLEEEGDESEDTSKLTGKTTEEKQNSGKLITTERSKTGHVK 89
>SB_12561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 166 PTVELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEERA 279
P +L +EGDE + T KTTE K G+ ER+
Sbjct: 46 PDSQLEEEGDESEDTSKLTGKTTEEKQNSGKLITTERS 83
>SB_26334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 72 EIQDDHIRELRRFHEGTRCGTDHPQGG*CCDPN 170
+I+D+ I+ RR G +C D +GG C P+
Sbjct: 35 DIEDERIKRNRRVVCGCQCEIDKKEGGGCVVPS 67
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 165 GHSISRLAGDQSHTECLHEIVEVLGCGH 82
GH + GD EC+ I L CGH
Sbjct: 1849 GHQCAAKCGDDCTKECMVMIERTLPCGH 1876
>SB_35349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 151 ANAVTPTVELRKEGDEYN 204
A TPT+EL+KEG E N
Sbjct: 229 AKVHTPTLELKKEGKEVN 246
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 111 EIVEVLGCGHLVFLTDEVHG*RKIFICAIEKRVKPS 4
++VEV+ + +F +V G RKI + ++K K S
Sbjct: 5852 DVVEVMAEANRLFTNADVQGARKILVVVMDKSSKNS 5887
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 103 DDFMKALGVGLITRKAANAVTPTVELRKEGDEYNFV 210
DDF L G++ K ANA+ P + + NF+
Sbjct: 88 DDFQNTLKSGVVLCKLANAIQPGAIKKINNAKMNFM 123
>SB_37879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 160 VTPTVELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEERADGVKVKSV 303
V+P + L D F +SST + EM K + + + G+ VK +
Sbjct: 245 VSPKISLPSSKDFQVFASSSTLEQYEMNVKNNIRYAQGQGWGLWVKLI 292
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -1
Query: 206 KLYSSPSLRSSTVGVTALAALRVISP 129
+L+ SP+LRS +G+ +AL+ ++P
Sbjct: 13 RLFHSPNLRSDAIGIFR-SALKAVTP 37
>SB_41551| Best HMM Match : Transglut_N (HMM E-Value=3.1e-25)
Length = 202
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 131 PTPSAFMKSSKFSDVVILY 75
P P A +K KF D+++L+
Sbjct: 141 PKPDAELKRKKFKDIIVLF 159
>SB_17380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 183 AQLHGWGHSISRLAGDQSHTECLHEIVEVLGCGH 82
A + W H IS L+G T C + E+ GH
Sbjct: 102 ADIDVWKHLISGLSGQDIETACAKCLAELTLDGH 135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,258,211
Number of Sequences: 59808
Number of extensions: 175655
Number of successful extensions: 422
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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