Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M15
(311 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48770.1 68416.m05326 hypothetical protein 29 0.50
At3g01880.1 68416.m00133 hypothetical protein 29 0.66
At3g45120.1 68416.m04870 hypothetical protein 28 1.5
At3g06020.1 68416.m00687 expressed protein ; expression supporte... 27 2.6
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to... 27 2.6
At3g01870.1 68416.m00132 hypothetical protein 27 3.5
At1g27040.2 68414.m03296 nitrate transporter, putative contains ... 27 3.5
At1g27040.1 68414.m03297 nitrate transporter, putative contains ... 27 3.5
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4... 26 6.1
At1g75770.1 68414.m08800 expressed protein 26 6.1
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla... 25 8.1
At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS cla... 25 8.1
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 25 8.1
At3g05660.1 68416.m00630 disease resistance family protein conta... 25 8.1
>At3g48770.1 68416.m05326 hypothetical protein
Length = 1899
Score = 29.5 bits (63), Expect = 0.50
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 22 FDRTNKNLPLAMDFIGKKYKMTTSENFDDFMKALGVGLITRKAANAVTPTVELRKEGDE- 198
FDRT K P FI ++Y + +F + + A+GVG + KA + V E D
Sbjct: 1455 FDRTWKLEPCDGPFIDEEYYGSDINSFREELIAIGVGHDSDKACQLLARNVYKLSETDAI 1514
Query: 199 ---YNFVTSSTFK 228
Y F++ + +K
Sbjct: 1515 SRVYRFLSEAEWK 1527
>At3g01880.1 68416.m00133 hypothetical protein
Length = 592
Score = 29.1 bits (62), Expect = 0.66
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 113 MKSSKFSDVVILYFLPMKSMAKGRFLFVRSKNASN 9
M + F+D+V+ F P A +FLF++S + N
Sbjct: 384 MFGATFTDIVVWLFFPYNGNAHLKFLFIKSLSLGN 418
>At3g45120.1 68416.m04870 hypothetical protein
Length = 106
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = -3
Query: 201 VFVTFLAQLHGWGHSISRLAGDQSHTECLHEIV 103
+FV+F+ + G+++SR GD + ++C+ + V
Sbjct: 35 LFVSFITTVKTLGNNVSRTHGDDAESDCVCDSV 67
>At3g06020.1 68416.m00687 expressed protein ; expression supported
by MPSS
Length = 300
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 175 ELRKEGDEYNFVTSSTFKTTEMKFKPGEEFEEERADGVKVKSV 303
E ++E +E T T + E + +E EEE+ + +KVK V
Sbjct: 228 ETKEEKEEEEEETIETVRDNEEEIPEYKEEEEEKEEEIKVKGV 270
>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
nitrate transporter (NTL1) GI:3377517 [Arabidopsis
thaliana]
Length = 585
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 79 KMTTSENFDDFMKALGVGLITRKAANAVTPTVELRKEG 192
K T +E ++ +GVGL+ A AV VE++++G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451
>At3g01870.1 68416.m00132 hypothetical protein
Length = 583
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 113 MKSSKFSDVVILYFLPMKSMAKGRFLFVRS 24
M F+D+V+ F P A+ +FLF +S
Sbjct: 379 MFGGTFTDIVVWIFYPFNGNARLKFLFFKS 408
>At1g27040.2 68414.m03296 nitrate transporter, putative contains
Pfam profile: PF00854 POT family; similar to nitrate
transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
Length = 563
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 79 KMTTSENFDDFMKALGVGLITRKAANAVTPTVELRKE 189
K+T SE ++ +GVGL+ A AV VEL+++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKRK 429
>At1g27040.1 68414.m03297 nitrate transporter, putative contains
Pfam profile: PF00854 POT family; similar to nitrate
transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
Length = 567
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 79 KMTTSENFDDFMKALGVGLITRKAANAVTPTVELRKE 189
K+T SE ++ +GVGL+ A AV VEL+++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKRK 433
>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
identical to AtMRP4 GI:2959767 from [Arabidopsis
thaliana]
Length = 1516
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -1
Query: 227 LNVEEVTKLYSSPS----LRSSTVGVTALAALRVISPTPSAFMKSSKFSDVVILY 75
L E+V +S P L +S G+T L SPT + S + SD V LY
Sbjct: 198 LRAEDVASFFSFPLTAFLLIASVRGITGLVTAETNSPTKPSDAVSVEKSDNVSLY 252
>At1g75770.1 68414.m08800 expressed protein
Length = 230
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/59 (20%), Positives = 26/59 (44%)
Frame = -3
Query: 264 EFFTRLELHLRGLECRRGDEIVFVTFLAQLHGWGHSISRLAGDQSHTECLHEIVEVLGC 88
+FF ++ + + + ++F + LH WG + R + SH +++ L C
Sbjct: 25 DFFDSIDYEISSILLQLSHPVIFSSDSPVLHKWGRTKKR-SSSSSHLHPPEPVIKSLPC 82
>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 858
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 7 GFD-AFFDRTNKNLPLAMDFIGKKYKMTTSENFDDFM 114
GFD A +D K + + + +K +TTS++FDDF+
Sbjct: 147 GFDSAKWDDEAKMIEEIANDVLRKLLLTTSKDFDDFV 183
>At5g46490.1 68418.m05724 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 357
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 7 GFD-AFFDRTNKNLPLAMDFIGKKYKMTTSENFDDFM 114
GFD A +D K + + + +K +TTS++FDDF+
Sbjct: 147 GFDSAKWDDEAKMIEEIANDVLRKLLLTTSKDFDDFV 183
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 172 VELRKEGDEYNFVTSS-TFKTTEMKFKPGEEFEEER-ADGVK 291
VE E D N + + F E++ KP +EF+ ER D VK
Sbjct: 163 VEFPTEEDAQNVMKQNLVFAGQELELKPKKEFDNEREKDEVK 204
>At3g05660.1 68416.m00630 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 883
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 240 HLRGLEC--RRGDEIVFVTFLAQLHGWGHSISRLA 142
H G+ C + G+ I + LHGW HS S L+
Sbjct: 71 HWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLS 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,465,173
Number of Sequences: 28952
Number of extensions: 123618
Number of successful extensions: 373
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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