Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_M14
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 27 0.93
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 2.8
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 2.8
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 25 3.7
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 24 6.5
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 24 6.5
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 24 6.5
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0... 24 6.5
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 24 6.5
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 24 6.5
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 24 8.6
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 0.93
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 328 SVFHRHFCFGINGIFR*YSGTYNLKKRLPSVAV 230
++FH + GING FR YS N+ K +P +++
Sbjct: 272 AIFHIYKTEGINGFFRGYSS--NMLKIIPVMSI 302
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.4 bits (53), Expect = 2.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 99 YFTVILCFFFSFFLQQNV 152
++ ++CFFFSF + NV
Sbjct: 1160 FYQSVICFFFSFLVINNV 1177
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 2.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +3
Query: 228 CTATLGNLFFKLYVPLYYLN----IPFIPKQKCLWNTEMKR 338
C A + FF+ YL+ +PFIP CLW E ++
Sbjct: 646 CLADVPLTFFEHQQKNSYLDAISHLPFIPLNSCLWLHEFEK 686
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 3.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 352 LFVIRLFISVFHRHFCFGINGI 287
+FVI LF S+FH H F IN I
Sbjct: 147 IFVISLFYSLFHAH-PFRINTI 167
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.2 bits (50), Expect = 6.5
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = -3
Query: 298 INGIFR*YSGTYNLKKRLPSVA 233
I+ +++ YS T+N+ +PS++
Sbjct: 80 ISSVYQSYSSTFNVSNHVPSIS 101
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 24.2 bits (50), Expect = 6.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 249 GCQAWQYMFKKNCKQYIK 196
GCQ + KNCK++ K
Sbjct: 256 GCQLCDTFYHKNCKEHAK 273
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 95 DCRRKSFKHYCTIIINYVLKTKKKPRAEFLQ 3
DC F+ II+Y+LK ++ AE +
Sbjct: 283 DCSEDEFREQVAWIIDYLLKNRRDIDAELYE 313
>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
Q0080|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 48
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 29 F*FLIHNLLLWYNNV*MIYADNQLFYSNSL 118
F FLI +LL+ ++V ++ N+LF S S+
Sbjct: 15 FGFLIFTVLLYISSVYVLPRYNELFISRSI 44
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 178 PHLYVHFYILFTIFFKHVLPRLATFFLNYM 267
P L+ + +L +F HV PR F Y+
Sbjct: 252 PSLHAGWAMLEALFLSHVFPRYRFCFYGYV 281
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 60 GTIMFE*FTPTINYFTVILCFFFSFFLQQNVQILFFIPITAFIRT 194
G + F T + ILC FF + L + ++ F PI+ + T
Sbjct: 296 GFLPFVLLTMDLQTAGTILCVFFPYSLIGHKELRFVYPISPILLT 340
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 246 NLFFKLYVPLYYLNIPFIPKQKCLWNTEMKRRMTN 350
+++F L V + L ++ + W TE +R+M N
Sbjct: 404 DIYFTLIVLIMTLCYCYVTVKITSWRTEARRKMVN 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,054
Number of Sequences: 5004
Number of extensions: 26804
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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