Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M14
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376...    26   8.1  

>10_08_0497 -
           18336819-18337140,18337226-18337360,18337579-18337673,
           18337759-18337845,18337923-18338129,18338209-18338535,
           18338711-18338803,18338861-18339175,18339283-18339792,
           18339889-18339960,18341209-18341256,18341427-18341551,
           18341640-18341661
          Length = 785

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 170 SYYRIYTYIFIYCLQFFLNMYC 235
           SY ++Y + +I+CL+ + ++ C
Sbjct: 397 SYQKVYDWQYIFCLELWTSVVC 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,052,833
Number of Sequences: 37544
Number of extensions: 127557
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)