Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M14
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38766| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)                   29   1.2  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   27   3.6  
SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)                 27   4.8  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              27   6.3  
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  

>SB_38766| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)
          Length = 625

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 93  INYFTVILCFFFSFFLQQNVQILFFIPITAFIRTFLYIVY 212
           ++ FT     F  FF    + +L+ + + A +   LYI+Y
Sbjct: 546 VSIFTPSSSLFADFFCDPEIAVLYLVLLNASLSPLLYIIY 585


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 267 VPLYYLNIPFIPKQKCLWNTEM 332
           VP+YY + P   K+ CL+NT +
Sbjct: 210 VPIYYFSNPCHEKKTCLFNTSL 231


>SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)
          Length = 306

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 155 NFIFYSYYRIYTYIFIYCLQFFLNMYCHAWQ 247
           +F+FY+YY   T +++      +N+  +AW+
Sbjct: 226 DFLFYNYYVEMTLLYLQFSNSCINIVVYAWR 256


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 167 YSYYRIYTYIFIYCLQFFLNMYCHAWQPFF*IIC 268
           Y Y   Y Y + YC  ++   YC+ +  +    C
Sbjct: 481 YCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYC 514



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 167 YSYYRIYTYIFIYCLQFFLNMYCH 238
           Y YY  Y Y + YC  ++   YC+
Sbjct: 475 YCYYYCYCYCYYYC-YYYCYCYCY 497


>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 35  FLIHNLLLWYNNV*MIYADNQL 100
           F + NLL  Y NV ++Y DN++
Sbjct: 295 FTLENLLCHYTNVRVVYTDNKV 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,956,092
Number of Sequences: 59808
Number of extensions: 172199
Number of successful extensions: 477
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)