Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M14
         (369 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062339-1|AAH62339.1|  458|Homo sapiens alkB, alkylation repair...    32   0.66 
Y10601-1|CAA71610.1| 1119|Homo sapiens ankyrin-like protein prot...    28   8.2  
BC100287-1|AAI00288.1|  366|Homo sapiens AFF4 protein protein.         28   8.2  

>BC062339-1|AAH62339.1|  458|Homo sapiens alkB, alkylation repair
           homolog 5 (E. coli) protein.
          Length = 458

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 149 CTNFIFYSYYRIYTYIFIYCLQFFLNMYCHAW 244
           C +F F  +  ++  +F++C  FFL +Y   W
Sbjct: 395 CPSFCFEGFVFVHWGVFVFCFLFFLILYIFPW 426


>Y10601-1|CAA71610.1| 1119|Homo sapiens ankyrin-like protein
           protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 90  TINYFTVILCFFFSFFLQQNVQILFFIPITAFIRTF 197
           T+ +  ++L F  SF++  N+Q  F  P+ + I+TF
Sbjct: 874 TVVFIFLLLAFGLSFYILLNLQDPFSSPLLSIIQTF 909


>BC100287-1|AAI00288.1|  366|Homo sapiens AFF4 protein protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
 Frame = +2

Query: 200 IYCLQFFLNMYCHAWQPFF*II---CSTILSKYPIYTKTKMSMEYGDEETNDK 349
           + C+   L    H+W P    I   C T  SK+P  TK      +G  E   K
Sbjct: 313 VSCVDEILKEMTHSWPPPLTAIHTPCKTEPSKFPFPTKESQQSNFGTGEQKKK 365


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,481,752
Number of Sequences: 237096
Number of extensions: 868137
Number of successful extensions: 1205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)