Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M14
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-5|CAB02855.2|  367|Caenorhabditis elegans Hypothetical pr...    31   0.26 
Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich ...    28   1.8  
AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine re...    28   1.8  
AF040645-13|AAB94983.1|  148|Caenorhabditis elegans Hypothetical...    28   2.4  
AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine re...    27   4.2  
AC024759-8|AAK68431.1|  551|Caenorhabditis elegans Hypothetical ...    27   4.2  
Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    27   5.5  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    26   7.3  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    26   7.3  
AL021566-1|CAA16501.1|  328|Caenorhabditis elegans Hypothetical ...    26   7.3  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    26   7.3  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    26   7.3  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    26   7.3  
AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine r...    26   7.3  
Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity...    26   9.7  

>Z81050-5|CAB02855.2|  367|Caenorhabditis elegans Hypothetical
           protein C50B6.6 protein.
          Length = 367

 Score = 31.1 bits (67), Expect = 0.26
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 237 TLGNLFFKLYVPLYYLNIPFIP 302
           TLGNL F+LY+ L+ L + ++P
Sbjct: 65  TLGNLLFELYISLFMLPVTYLP 86


>Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical
           protein C50H2.1 protein.
          Length = 929

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 87  PTINY-FTVILCFFFSFFLQQNVQILFFIPITAFIRTFLYIVY 212
           PT+ + FT  + F           ++FF PI AF   FLY+ +
Sbjct: 652 PTLFFGFTATIGFPLLSLSSAKFVLVFFFPINAFANPFLYVFF 694


>AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich
           repeat-containingG protein-coupled receptor protein.
          Length = 929

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 87  PTINY-FTVILCFFFSFFLQQNVQILFFIPITAFIRTFLYIVY 212
           PT+ + FT  + F           ++FF PI AF   FLY+ +
Sbjct: 652 PTLFFGFTATIGFPLLSLSSAKFVLVFFFPINAFANPFLYVFF 694


>AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein94 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 365 K*GSFICHSSLHLRIP*TFLFWYKWDI 285
           K G++I   +L L +P TF+F++++DI
Sbjct: 161 KFGAYIFMGALALSLPLTFIFYFRYDI 187


>AF040645-13|AAB94983.1|  148|Caenorhabditis elegans Hypothetical
           protein F52C6.13 protein.
          Length = 148

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 96  NYFTVILCFFFSFFLQQNVQILFFIPITAFIRTFLYIVYNFF*TCTATLGNLFFKL 263
           N ++ I    F FF+ +  +I+FF P++    +F   V+NF    +  L NLF  +
Sbjct: 35  NCYSTINFSCFPFFISRFSEIVFFFPLSDLKVSFPEDVHNFINPVSPCL-NLFLTI 89


>AF045639-6|AAX22296.1|  392|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 5 protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 111 ILCFFFSFFLQQNVQILFFIPITAF--IRTFLYIVYNFF*TCTATLGNLFFKLYVPLY 278
           ++CF  +FF      +L     T    IR ++Y+ +NF      TL   F   Y PL+
Sbjct: 233 VMCFSIAFFASLCTSMLHVDEWTESQTIRNWVYMAFNFSCWSYGTLVPFFMLAYNPLW 290


>AC024759-8|AAK68431.1|  551|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.1 protein.
          Length = 551

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 158 FIFYSYYRIYTYIFIYCLQFFLNMY-CHAWQPFF*IICSTILSKYPIY 298
           FI+   +R   ++F+Y   FF+ ++ C +   F  ++   + S +P+Y
Sbjct: 42  FIYRPLHRSPQHLFLYVQAFFMIVFDCLSPPLFLFLLLDKLFSTFPVY 89


>Z93379-2|CAB07592.1|  170|Caenorhabditis elegans Hypothetical
           protein F21H7.3 protein.
          Length = 170

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 228 CTATLGNLFFKLYVPLYYLNIPFIPKQKC 314
           C   + NLFF L +P+++L+I F  + KC
Sbjct: 6   CYLVILNLFF-LIIPIWFLSIGFKNQGKC 33


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 191 YIFIYCLQFFLNMY-CHAWQPFF*II 265
           +IFIYC  FF+  Y  H  Q  F +I
Sbjct: 98  FIFIYCFSFFIIFYILHVLQQTFHVI 123


>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 102 FTVILCFFFSFFLQQNVQILFFIPITAF-IRTFLYIVYNFF*TCTATLGNLFFKLYVP 272
           F+    F+F + + +   IL  +P+T F I+   Y       TC A+  +LF  L+ P
Sbjct: 358 FSAFCFFYFGYHVHEKAIILVTVPMTVFAIKNPKYHSILIHLTCIASF-SLFPLLFTP 414


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 81   FTPTINYFTVILCFFFSFFLQQNVQILFFIPITAFIRTFLYIVYNF 218
            FT T  Y  VIL FF        +++L    I +  R+F  I   F
Sbjct: 1303 FTYTFGYLVVILRFFTIASRNSTLKMLMLTVIMSMFRSFFIITALF 1348


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 81   FTPTINYFTVILCFFFSFFLQQNVQILFFIPITAFIRTFLYIVYNF 218
            FT T  Y  VIL FF        +++L    I +  R+F  I   F
Sbjct: 1337 FTYTFGYLVVILRFFTIASRNSTLKMLMLTVIMSMFRSFFIITALF 1382


>AL021566-1|CAA16501.1|  328|Caenorhabditis elegans Hypothetical
           protein F08E10.1 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 129 SFFLQQNVQ-ILFFIPITAFIRTFLYIVY 212
           +F +Q +V  ILF +P+ AFI +F+Y  Y
Sbjct: 237 AFIIQTSVTLILFVVPVNAFI-SFIYFNY 264


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 81   FTPTINYFTVILCFFFSFFLQQNVQILFFIPITAFIRTFLYIVYNF 218
            FT T  Y  VIL FF        +++L    I +  R+F  I   F
Sbjct: 1395 FTYTFGYLVVILRFFTIASRNSTLKMLMLTVIMSMFRSFFIITALF 1440


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 81   FTPTINYFTVILCFFFSFFLQQNVQILFFIPITAFIRTFLYIVYNF 218
            FT T  Y  VIL FF        +++L    I +  R+F  I   F
Sbjct: 1448 FTYTFGYLVVILRFFTIASRNSTLKMLMLTVIMSMFRSFFIITALF 1493


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 81   FTPTINYFTVILCFFFSFFLQQNVQILFFIPITAFIRTFLYIVYNF 218
            FT T  Y  VIL FF        +++L    I +  R+F  I   F
Sbjct: 1367 FTYTFGYLVVILRFFTIASRNSTLKMLMLTVIMSMFRSFFIITALF 1412


>AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine
           receptor, class t protein71 protein.
          Length = 365

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 117 CFFFSFFLQQNVQILFFI 170
           CFF  F + QNV+IL F+
Sbjct: 340 CFFLQFRIFQNVEILTFV 357


>Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical
           protein T21H8.2 protein.
          Length = 361

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 186 IRTFLYIVYNFF*TCTATLGNLFFKLYV 269
           +R  LY+V +FF TC+A  G  F  +Y+
Sbjct: 19  VRGALYLVPSFFNTCSAA-GTFFVFVYI 45


>Z70306-2|CAA94323.2|  785|Caenorhabditis elegans Hypothetical
           protein C06G8.2 protein.
          Length = 785

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 114 LCFFFSFFLQQNVQILFFIPITAFIRTFLYIVYNFF 221
           LC  FSF+  + V  L+F  I  F ++F  ++++ F
Sbjct: 42  LCERFSFYGMRAVLTLYFFNILNFSQSFSTVLFHAF 77


>U39678-6|AAK39206.1|  208|Caenorhabditis elegans Hypothetical
           protein C39D10.2 protein.
          Length = 208

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 170 SYYRIYTYIFIYCLQFFLNMYCHAW 244
           +++RI+ Y F+     F N++ H W
Sbjct: 68  TFFRIFKYFFVSYFSIFFNVF-HGW 91


>AF000417-1|AAC39118.1|  785|Caenorhabditis elegans high-affinity
           peptide transporter protein.
          Length = 785

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 114 LCFFFSFFLQQNVQILFFIPITAFIRTFLYIVYNFF 221
           LC  FSF+  + V  L+F  I  F ++F  ++++ F
Sbjct: 42  LCERFSFYGMRAVLTLYFFNILNFSQSFSTVLFHAF 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,881,318
Number of Sequences: 27780
Number of extensions: 146960
Number of successful extensions: 455
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)