Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_M14
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   2.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   4.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   8.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 196 FYILFTIFFKHVLPRLATFFLNYM 267
           + + F  F KH+L +L T   NY+
Sbjct: 882 YALKFFPFDKHILDKLPTLISNYI 905


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 204 IVYNFF*TCTATLGNLFFKLYV--PLYY 281
           +  NFF    ATLG+ +  L+V   +YY
Sbjct: 196 VCQNFFYQIYATLGSFYIPLFVMIQVYY 223


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 352 LFVIRLFISVFHRHFCFGINGIFR*YSGTYNL 257
           LFVI L IS F   FC     +   Y  T+ L
Sbjct: 89  LFVINLAISNFLMMFCMSPPMVINCYYETWVL 120


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 352 LFVIRLFISVFHRHFCFGINGIFR*YSGTYNL 257
           LFVI L IS F   FC     +   Y  T+ L
Sbjct: 55  LFVINLAISDFLMMFCMSPPMVINCYYETWVL 86


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 113 SLXXXXXXXTTKCTNFIFYSYYRIYTYI 196
           SL       +TKC    +YSY  + T +
Sbjct: 623 SLNSTNVTLSTKCPYPSYYSYIGVLTLV 650


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 78  IQTLLYHNNKLCIK 37
           IQ +L   NKLCI+
Sbjct: 262 IQQILIRMNKLCIQ 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,422
Number of Sequences: 438
Number of extensions: 1902
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)